Variant report

Variant	rs7132520
Chromosome Location	chr12:117125919-117125920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:117028125..117029029-chr12:117125531..117126255,2	MCF-7	breast:
2	chr12:116827555..116830462-chr12:117125918..117127767,2	MCF-7	breast:
3	chr12:117124747..117126838-chr12:117131104..117134060,2	K562	blood:
4	chr12:116436001..116436573-chr12:117125587..117126370,2	K562	blood:
5	chr12:116992180..116993843-chr12:117124492..117127076,2	K562	blood:
6	chr12:117124906..117127466-chr12:117130857..117133400,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10774881	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10774882	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10850700	0.96[EUR][1000 genomes]
rs10850701	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17500613	1.00[ASN][1000 genomes]
rs2393083	1.00[ASN][1000 genomes]
rs6490084	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7298460	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs7308011	0.85[EUR][1000 genomes]
rs7314274	1.00[ASN][1000 genomes]
rs73218427	1.00[ASN][1000 genomes]
rs73218429	1.00[ASN][1000 genomes]
rs7957270	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832523	chr12:117090343-117273810	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117122600-117127200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:117124400-117127200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr12:117125000-117130800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:117125600-117126000	Bivalent Enhancer	Adipose Nuclei	Adipose
5	chr12:117125600-117126000	Enhancers	Fetal Muscle Leg	muscle
6	chr12:117125600-117126000	Enhancers	Fetal Thymus	thymus
7	chr12:117125600-117126000	Enhancers	Spleen	Spleen
8	chr12:117125600-117126000	Enhancers	Dnd41	blood
9	chr12:117125600-117126000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr12:117125600-117126200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr12:117125600-117126200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr12:117125600-117126200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr12:117125600-117126200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr12:117125600-117126200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr12:117125600-117126200	Enhancers	Primary B cells from peripheral blood	blood
16	chr12:117125600-117126600	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr12:117125600-117129000	Enhancers	Primary hematopoietic stem cells	blood
18	chr12:117125800-117126000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:117125800-117126000	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr12:117125800-117126000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr12:117125800-117126000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr12:117125800-117126000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
23	chr12:117125800-117126200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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