Variant report

Variant	rs10775123
Chromosome Location	chr15:41953420-41953421
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41850304..41852496-chr15:41951450..41954168,2	MCF-7	breast:
2	chr15:41694405..41696232-chr15:41951783..41954163,3	K562	blood:
3	chr15:41952932..41955703-chr15:42081114..42083481,2	K562	blood:
4	chr15:41849370..41852913-chr15:41951069..41953769,6	K562	blood:
5	chr15:41847317..41853712-chr15:41951201..41955578,8	K562	blood:
6	chr15:41856836..41858542-chr15:41952173..41953837,2	K562	blood:
7	chr15:41952550..41954410-chr15:41959320..41962249,3	MCF-7	breast:
8	chr15:41624254..41626833-chr15:41952098..41954867,2	K562	blood:
9	chr15:41853373..41858542-chr15:41950830..41955637,10	K562	blood:
10	chr15:41953002..41954735-chr15:41971952..41974245,2	MCF-7	breast:
11	chr15:41913263..41914798-chr15:41951320..41953702,2	MCF-7	breast:
12	chr15:41952704..41955677-chr15:42269856..42272362,2	K562	blood:
13	chr15:41953002..41954579-chr15:41954789..41956484,2	MCF-7	breast:
14	chr15:41952625..41954330-chr15:41973061..41975209,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000259838	Chromatin interaction
ENSG00000137804	Chromatin interaction
ENSG00000104147	Chromatin interaction
ENSG00000174197	Chromatin interaction
ENSG00000137806	Chromatin interaction
ENSG00000092445	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1008710	1.00[CEU][hapmap]
rs10152332	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10152364	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10775122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10775124	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1081022	1.00[CEU][hapmap]
rs11070345	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632100	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634840	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11639146	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11639249	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11855017	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1197666	1.00[CEU][hapmap]
rs1197704	0.85[CEU][hapmap];0.89[CHB][hapmap]
rs1197768	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1197769	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1197772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12148330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12900295	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12902548	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12915325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916525	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12916992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1648830	1.00[CEU][hapmap]
rs1648833	1.00[CEU][hapmap]
rs1648834	1.00[CEU][hapmap]
rs1648835	1.00[CEU][hapmap]
rs1672465	1.00[CEU][hapmap]
rs1672466	1.00[CEU][hapmap]
rs16972089	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs16972136	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1867416	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1867417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880937	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1880938	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1899819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1899820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1899821	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1918314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2009310	0.91[ASN][1000 genomes]
rs2141141	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2178004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250964	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2577947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2577950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2577951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2577953	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2577954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2577955	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2577958	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2577959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2605569	0.88[EUR][1000 genomes]
rs2605570	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2695162	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2695163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2695164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2695166	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2695168	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2695169	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2695170	0.91[EUR][1000 genomes]
rs2918051	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2925337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2950446	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4244585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4270151	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4371125	0.89[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4465584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4923908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924568	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924571	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62002067	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62002069	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493008	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6493010	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7164209	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7169496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7169668	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176474	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7177232	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7177911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027390	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8028886	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8030179	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8034261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038148	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs8038783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8039440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10775123	MGA	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41951800-41954800	Active TSS	H9 Cell Line	embryonic stem cell
2	chr15:41951800-41955400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:41952000-41953600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
4	chr15:41952000-41954000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
5	chr15:41952000-41954000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:41952000-41954000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:41952000-41954000	Flanking Active TSS	Right Ventricle	heart
8	chr15:41952000-41954400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:41952000-41954400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
10	chr15:41952000-41954400	Active TSS	Brain Angular Gyrus	brain
11	chr15:41952000-41954400	Active TSS	Brain Substantia Nigra	brain
12	chr15:41952000-41954400	Flanking Active TSS	Placenta	Placenta
13	chr15:41952000-41954400	Active TSS	Sigmoid Colon	Sigmoid Colon
14	chr15:41952000-41954400	Active TSS	HSMM	muscle
15	chr15:41952000-41954400	Active TSS	HSMMtube	muscle
16	chr15:41952000-41954600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr15:41952000-41954600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:41952000-41954600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:41952000-41954600	Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr15:41952000-41954600	Flanking Active TSS	Primary B cells from peripheral blood	blood
21	chr15:41952000-41954600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
22	chr15:41952000-41954600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr15:41952000-41954600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:41952000-41954600	Flanking Active TSS	Fetal Intestine Large	intestine
25	chr15:41952000-41954600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr15:41952000-41954600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr15:41952000-41954600	Flanking Active TSS	GM12878-XiMat	blood
28	chr15:41952000-41954600	Flanking Active TSS	Osteobl	bone
29	chr15:41952000-41954800	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr15:41952000-41954800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:41952000-41954800	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr15:41952000-41954800	Flanking Active TSS	Primary B cells from cord blood	blood
33	chr15:41952000-41954800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
34	chr15:41952000-41954800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr15:41952000-41954800	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr15:41952000-41954800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr15:41952000-41954800	Flanking Active TSS	NH-A	brain
38	chr15:41952000-41955000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:41952000-41955400	Flanking Active TSS	Dnd41	blood
40	chr15:41952200-41953800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
41	chr15:41952200-41953800	Flanking Active TSS	Stomach Smooth Muscle	stomach
42	chr15:41952200-41954000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr15:41952200-41954000	Flanking Active TSS	Esophagus	oesophagus
44	chr15:41952200-41954000	Flanking Active TSS	Fetal Brain Male	brain
45	chr15:41952200-41954000	Flanking Active TSS	Stomach Mucosa	stomach
46	chr15:41952200-41954200	Active TSS	Ovary	ovary
47	chr15:41952200-41954400	Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr15:41952200-41954400	Active TSS	HUES64 Cell Line	embryonic stem cell
49	chr15:41952200-41954400	Active TSS	Aorta	Aorta
50	chr15:41952200-41954400	Active TSS	Pancreatic Islets	Pancreatic Islet

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