Variant report

Variant	rs2925337
Chromosome Location	chr15:42065422-42065423
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:42064685-42065680	SK-N-SH	brain:	n/a	n/a
2	MYC	chr15:42064973-42065532	K562	blood:	n/a	chr15:42065312-42065323 chr15:42065312-42065322 chr15:42065311-42065324 chr15:42065314-42065321 chr15:42065313-42065322 chr15:42065313-42065322 chr15:42065311-42065324 chr15:42065361-42065370 chr15:42065311-42065324 chr15:42065311-42065324 chr15:42065313-42065323 chr15:42065312-42065323
3	RAD21	chr15:42064716-42065533	SK-N-SH	brain:	n/a	n/a
4	SMC3	chr15:42064931-42065725	HepG2	liver:	n/a	n/a
5	CTCF	chr15:42064908-42065435	IMR90	lung:	n/a	n/a
6	POLR2A	chr15:42064869-42065759	PANC-1	pancreas:	n/a	n/a
7	CTCF	chr15:42064840-42065495	A549	lung:	n/a	n/a
8	PML	chr15:42064831-42067236	GM12878	blood:	n/a	n/a
9	RAD21	chr15:42064846-42065461	ECC-1	luminal epithelium:	n/a	n/a
10	RAD21	chr15:42064850-42065437	HepG2	liver:	n/a	n/a
11	CTCF	chr15:42065400-42065550	GM12872	blood:	n/a	n/a
12	RAD21	chr15:42064899-42065489	IMR90	lung:	n/a	n/a
13	MAX	chr15:42064909-42065505	K562	blood:	n/a	chr15:42065312-42065323 chr15:42065312-42065322 chr15:42065311-42065324 chr15:42065314-42065321 chr15:42065313-42065322 chr15:42065313-42065322 chr15:42065311-42065324 chr15:42065361-42065370 chr15:42065311-42065324 chr15:42065311-42065324 chr15:42065313-42065323 chr15:42065312-42065323
14	POLR2A	chr15:42065123-42067216	GM12878	blood:	n/a	n/a
15	POLR2A	chr15:42064944-42067574	Hela-S3	cervix:	n/a	n/a
16	RAD21	chr15:42064760-42065510	HCT-116	colon:	n/a	n/a
17	POLR2A	chr15:42064870-42065500	HepG2	liver:	n/a	n/a
18	MXI1	chr15:42064792-42067721	IMR90	lung:	n/a	chr15:42067063-42067078
19	MAX	chr15:42064921-42065493	NB4	blood:	n/a	chr15:42065312-42065323 chr15:42065312-42065322 chr15:42065311-42065324 chr15:42065314-42065321 chr15:42065313-42065322 chr15:42065313-42065322 chr15:42065311-42065324 chr15:42065361-42065370 chr15:42065311-42065324 chr15:42065311-42065324 chr15:42065313-42065323 chr15:42065312-42065323
20	CTCF	chr15:42064786-42065429	HCT-116	colon:	n/a	n/a
21	MYC	chr15:42064852-42065595	NB4	blood:	n/a	chr15:42065312-42065323 chr15:42065312-42065322 chr15:42065311-42065324 chr15:42065314-42065321 chr15:42065313-42065322 chr15:42065313-42065322 chr15:42065311-42065324 chr15:42065361-42065370 chr15:42065311-42065324 chr15:42065311-42065324 chr15:42065313-42065323 chr15:42065312-42065323
22	SMC3	chr15:42064852-42065549	SK-N-SH	brain:	n/a	n/a
23	RAD21	chr15:42064902-42065434	ECC-1	luminal epithelium:	n/a	n/a
24	RAD21	chr15:42064771-42065575	HCT-116	colon:	n/a	n/a
25	EBF1	chr15:42064940-42067330	GM12878	blood:	n/a	chr15:42065713-42065724
26	STAT1	chr15:42065011-42065461	GM12878	blood:	n/a	n/a
27	GATA2	chr15:42064949-42065475	SH-SY5Y	brain:	n/a	n/a
28	SMC3	chr15:42064898-42065710	GM12878	blood:	n/a	n/a
29	POLR2A	chr15:42064987-42067170	GM12891	blood:	n/a	n/a
30	EBF1	chr15:42065392-42065966	GM12878	blood:	n/a	chr15:42065713-42065724
31	RAD21	chr15:42064901-42065422	MCF-7	breast:	n/a	n/a
32	POLR2A	chr15:42064878-42067056	K562	blood:	n/a	n/a
33	CTCF	chr15:42064885-42065434	HCT-116	colon:	n/a	n/a
34	SMC3	chr15:42064912-42065473	Hela-S3	cervix:	n/a	n/a
35	CTCF	chr15:42065360-42065510	GM12864	blood:	n/a	n/a
36	POLR2A	chr15:42064868-42067318	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:42065401-42065451	HMEC	breast:	n/a
2	chr15:42065401-42065451	LNCaP	prostate:	n/a
3	chr15:42065401-42065451	NT2-D1	testis:	n/a
4	chr15:42065401-42065451	HIPEpiC	eye:	n/a
5	chr15:42065401-42065451	Caco-2	colon:	n/a
6	chr15:42065401-42065451	ECC-1	luminal epithelium:	n/a
7	chr15:42065401-42065451	GM06990	blood:	n/a
8	chr15:42065401-42065451	ovcar-3	ovarian:	n/a
9	chr15:42065401-42065451	Hela-S3	cervix:	n/a
10	chr15:42065401-42065451	U87	brain:	n/a
11	chr15:42065401-42065451	HRPEpiC	eye:	n/a
12	chr15:42065401-42065451	AG10803	skin:	n/a
13	chr15:42065401-42065451	HUVEC	blood vessel:	n/a
14	chr15:42065401-42065451	HEEpiC	esophagus:	n/a
15	chr15:42065401-42065451	AG04449	skin:	fetal
16	chr15:42065401-42065451	BJ	skin:	n/a
17	chr15:42065401-42065451	HCF	heart:	n/a
18	chr15:42065401-42065451	IMR90	lung:	fetal
19	chr15:42065401-42065451	K562	blood:	n/a
20	chr15:42065401-42065451	AoSMC	blood vessel:	n/a
21	chr15:42065401-42065451	GM19239	blood:	n/a
22	chr15:42065401-42065451	HRE	kidney:	n/a
23	chr15:42065401-42065451	HRCEpiC	kidney:	n/a
24	chr15:42065401-42065451	HNPCEpiC	eye:	n/a
25	chr15:42065401-42065451	Jurkat	blood:	n/a
26	chr15:42065401-42065451	AG09319	gingival:	n/a
27	chr15:42065401-42065451	BE2_C	brain:	n/a
28	chr15:42065401-42065451	GM12891	blood:	n/a
29	chr15:42065401-42065451	HCT-116	colon:	n/a
30	chr15:42065401-42065451	HPAEpiC	pulmonary alveolar:	n/a
31	chr15:42065401-42065451	PFSK-1	brain:	n/a
32	chr15:42065401-42065451	RPTEC	kidney:	n/a
33	chr15:42065401-42065451	MCF-7	breast:	n/a
34	chr15:42065401-42065451	SK-N-MC	brain:	n/a
35	chr15:42065401-42065451	AG04450	lung:	fetal
36	chr15:42065401-42065451	HEK293	kidney:	embryo
37	chr15:42065401-42065451	NHBE	bronchial:	n/a
38	chr15:42065401-42065451	HAEpiC	amniotic membrane:	n/a
39	chr15:42065401-42065451	NH-A	brain:	n/a
40	chr15:42065401-42065451	T-47D	breast:	n/a
41	chr15:42065401-42065451	PANC-1	pancreas:	n/a
42	chr15:42065401-42065451	HepG2	liver:	n/a
43	chr15:42065401-42065451	ProgFib	skin:	n/a
44	chr15:42065401-42065451	Hepatocyte	liver:	n/a
45	chr15:42065401-42065451	GM12878	blood:	n/a
46	chr15:42065401-42065451	H1-hESC	embryonic stem cell:	embryo
47	chr15:42065401-42065451	HL-60	blood:	n/a
48	chr15:42065401-42065451	HCPEpiC	choroid plexus:	n/a
49	chr15:42065401-42065451	NHDF-neo	bronchial:	n/a
50	chr15:42065401-42065451	GM12892	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:42064035..42067811-chr15:42102222..42105290,4	K562	blood:
2	chr15:42063685..42066999-chr15:42102378..42105267,3	MCF-7	breast:
3	chr15:42010789..42012329-chr15:42064397..42066596,2	K562	blood:
4	chr15:41851361..41854178-chr15:42065182..42067599,2	K562	blood:

Variant related genes	Relation type
MAPKBP1	TF binding region
ENSG00000260814	TF binding region
MAPKBP1	CpG island
ENSG00000260814	CpG island
ENSG00000270702	Chromatin interaction
ENSG00000137802	Chromatin interaction
ENSG00000092445	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1008710	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs10152332	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10152364	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10775122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap]
rs10775123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10775124	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1081022	1.00[CEU][hapmap];0.91[MEX][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11070345	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11070347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11070350	0.81[ASN][1000 genomes]
rs11632100	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11634840	0.85[ASN][1000 genomes]
rs11855017	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11857301	0.82[EUR][1000 genomes]
rs1197666	1.00[CEU][hapmap]
rs1197670	0.87[ASN][1000 genomes]
rs1197704	0.85[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1197768	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1197769	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1197772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12148330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12441249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12915325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12916992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1648827	0.81[ASN][1000 genomes]
rs1648830	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs1648831	0.81[ASN][1000 genomes]
rs1648832	0.81[ASN][1000 genomes]
rs1648833	1.00[CEU][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes]
rs1648834	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs1648835	1.00[CEU][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes]
rs1672464	0.81[ASN][1000 genomes]
rs1672465	1.00[CEU][hapmap]
rs1672466	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs16972089	0.93[CEU][hapmap];0.89[GIH][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16972136	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1867416	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1867417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1880937	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1880938	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1899819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1899820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1899821	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1918314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2141141	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2178004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2250964	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2577947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2577950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2577951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2577952	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2577953	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2577954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2577955	0.93[ASN][1000 genomes]
rs2577958	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2577959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2605569	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2605570	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2695162	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2695163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2695164	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2695166	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2695168	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2695169	0.92[CEU][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2695170	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2918051	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2950446	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3743028	0.82[ASN][1000 genomes]
rs4244585	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs4270151	0.80[ASN][1000 genomes]
rs4371125	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4465584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4923908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4924568	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4924571	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4924572	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57498313	0.81[ASN][1000 genomes]
rs62002069	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6493008	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6493010	0.87[EUR][1000 genomes]
rs7164209	0.87[ASN][1000 genomes]
rs7165230	0.81[ASN][1000 genomes]
rs7169496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7169668	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7177911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7178205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8027390	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8028886	0.84[ASN][1000 genomes]
rs8034261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8038148	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs8038783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[ASN][1000 genomes]
rs8039440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049514	chr15:41958482-42081210	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv1036086	chr15:42004962-42091451	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1054671	chr15:42016097-42098896	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1038894	chr15:42038152-42077452	Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	esv2757597	chr15:42047173-42122617	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	esv2760027	chr15:42047173-42122617	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	nsv904113	chr15:42050390-42118971	Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv904114	chr15:42050390-42119900	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv427958	chr15:42051317-42301283	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2925337	C17orf85	trans	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42056400-42066000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:42057600-42066000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:42059000-42065600	Weak transcription	Fetal Brain Male	brain
4	chr15:42059400-42066000	Weak transcription	Colonic Mucosa	Colon
5	chr15:42059600-42065600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:42059600-42065800	Weak transcription	Pancreas	Pancrea
7	chr15:42059600-42066000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:42059600-42066200	Weak transcription	Aorta	Aorta
9	chr15:42059600-42066200	Weak transcription	Lung	lung
10	chr15:42059600-42066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:42059800-42065600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:42059800-42065600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:42059800-42065600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr15:42059800-42066000	Weak transcription	Esophagus	oesophagus
15	chr15:42059800-42066200	Weak transcription	Ovary	ovary
16	chr15:42060400-42065800	Weak transcription	Brain Germinal Matrix	brain
17	chr15:42062400-42065800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr15:42062400-42066000	Weak transcription	Left Ventricle	heart
19	chr15:42064800-42065600	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr15:42064800-42065600	Enhancers	Primary B cells from cord blood	blood
21	chr15:42064800-42065600	Enhancers	HSMM	muscle
22	chr15:42064800-42065800	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr15:42064800-42065800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:42064800-42065800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:42064800-42065800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr15:42064800-42065800	Enhancers	HMEC	breast
27	chr15:42064800-42066000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr15:42064800-42066000	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr15:42065000-42065600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:42065000-42065600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:42065000-42065600	Enhancers	K562	blood
32	chr15:42065000-42065800	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr15:42065000-42065800	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr15:42065000-42065800	Enhancers	Fetal Stomach	stomach
35	chr15:42065000-42066000	Enhancers	Primary B cells from peripheral blood	blood
36	chr15:42065000-42066000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:42065000-42066000	Enhancers	Fetal Thymus	thymus
38	chr15:42065000-42066000	Enhancers	Thymus	Thymus
39	chr15:42065200-42065600	Enhancers	H1 Cell Line	embryonic stem cell
40	chr15:42065200-42065600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr15:42065200-42065600	Enhancers	Primary hematopoietic stem cells	blood
42	chr15:42065200-42065600	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr15:42065200-42065600	Enhancers	Muscle Satellite Cultured Cells	--
44	chr15:42065200-42065600	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr15:42065200-42065600	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr15:42065200-42065600	Enhancers	Osteobl	bone
47	chr15:42065200-42065800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
48	chr15:42065200-42065800	Enhancers	H9 Cell Line	embryonic stem cell
49	chr15:42065200-42065800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr15:42065200-42065800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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