Variant report

Variant	rs10775257
Chromosome Location	chr15:93439486-93439487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:93433692-93455675	K562	blood:	n/a	n/a
2	POLR2A	chr15:93439268-93439798	K562	blood:	n/a	n/a
3	KAP1	chr15:93439037-93440279	K562	blood:	n/a	n/a
4	ARID3A	chr15:93439133-93440311	K562	blood:	n/a	n/a
5	POLR2A	chr15:93439092-93439806	K562	blood:	n/a	n/a
6	POLR2A	chr15:93439380-93439719	PFSK-1	brain:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93373333..93375987-chr15:93438173..93440371,2	K562	blood:
2	chr15:93333327..93367027-chr15:93419774..93462750,363	K562	blood:
3	chr15:93344712..93371031-chr15:93418700..93467618,365	MCF-7	breast:
4	chr15:93337836..93370220-chr15:93420085..93452591,332	K562	blood:
5	chr15:93345383..93371459-chr15:93416796..93454653,318	MCF-7	breast:
6	chr15:93375183..93376781-chr15:93438134..93441021,2	K562	blood:

No data

Variant related genes	Relation type
CHD2	TF binding region
ENSG00000185442	Chromatin interaction
ENSG00000258922	Chromatin interaction
ENSG00000258527	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11074115	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11074116	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12900342	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1439620	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1439621	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1992283	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2119011	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4778055	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
5	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
6	nsv1047496	chr15:93412778-93475878	Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
7	nsv1036560	chr15:93413594-93462163	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
8	esv1851305	chr15:93429646-93446869	Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93428600-93443600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:93429400-93442400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:93429600-93441800	Strong transcription	H1 Cell Line	embryonic stem cell
4	chr15:93430400-93442000	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr15:93430800-93440600	Weak transcription	Aorta	Aorta
6	chr15:93430800-93442200	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:93430800-93442200	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:93430800-93443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr15:93431000-93442400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:93431600-93442200	Strong transcription	Primary hematopoietic stem cells	blood
11	chr15:93431600-93442800	Strong transcription	NHDF-Ad	bronchial
12	chr15:93431600-93443000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
13	chr15:93431800-93439800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:93431800-93441800	Strong transcription	HSMM	muscle
15	chr15:93431800-93442000	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr15:93431800-93442200	Strong transcription	NH-A	brain
17	chr15:93431800-93442800	Strong transcription	Osteobl	bone
18	chr15:93432000-93442400	Strong transcription	Muscle Satellite Cultured Cells	--
19	chr15:93432200-93439800	Strong transcription	Fetal Lung	lung
20	chr15:93432600-93442400	Strong transcription	HUVEC	blood vessel
21	chr15:93432600-93442600	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr15:93432600-93443200	Weak transcription	Right Atrium	heart
23	chr15:93433200-93442000	Genic enhancers	Dnd41	blood
24	chr15:93433200-93442800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr15:93433400-93439600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:93433400-93442200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr15:93433600-93439600	Strong transcription	NHLF	lung
28	chr15:93434000-93441000	Genic enhancers	Primary B cells from cord blood	blood
29	chr15:93434600-93442600	Strong transcription	Placenta	Placenta
30	chr15:93434800-93442200	Strong transcription	HMEC	breast
31	chr15:93435000-93442800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr15:93435000-93443200	Weak transcription	Stomach Mucosa	stomach
33	chr15:93436200-93440800	Weak transcription	NHEK	skin
34	chr15:93436200-93443400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:93436400-93443200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr15:93436400-93443200	Weak transcription	Ovary	ovary
37	chr15:93436600-93439800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr15:93436600-93443200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr15:93436600-93443200	Weak transcription	Small Intestine	intestine
40	chr15:93436800-93442800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:93437000-93442200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
42	chr15:93437200-93439800	Genic enhancers	Rectal Mucosa Donor 31	rectum
43	chr15:93437400-93440000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr15:93437400-93440400	Genic enhancers	A549	lung
45	chr15:93437400-93443400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr15:93437600-93439800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr15:93437600-93443400	Weak transcription	Lung	lung
48	chr15:93437800-93439600	Weak transcription	Brain Anterior Caudate	brain
49	chr15:93437800-93441200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr15:93437800-93443200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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