Variant report

Variant	rs11074116
Chromosome Location	chr15:93436311-93436312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93333327..93367027-chr15:93419774..93462750,363	K562	blood:
2	chr15:93344712..93371031-chr15:93418700..93467618,365	MCF-7	breast:
3	chr15:93433853..93436471-chr15:93483443..93485389,2	K562	blood:
4	chr15:93337836..93370220-chr15:93420085..93452591,332	K562	blood:
5	chr15:93345383..93371459-chr15:93416796..93454653,318	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258527	Chromatin interaction
ENSG00000258922	Chromatin interaction
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10775257	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11074115	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12900342	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1439620	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1439621	0.90[EUR][1000 genomes]
rs1992283	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2119011	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4778055	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
5	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
6	nsv1047496	chr15:93412778-93475878	Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
7	nsv1036560	chr15:93413594-93462163	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
8	esv1851305	chr15:93429646-93446869	Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93427200-93437800	Weak transcription	Esophagus	oesophagus
2	chr15:93428600-93437000	Weak transcription	Colonic Mucosa	Colon
3	chr15:93428600-93443600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:93428800-93437800	Weak transcription	Right Ventricle	heart
5	chr15:93429000-93437000	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr15:93429400-93442400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:93429600-93438600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:93429600-93439200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:93429600-93441800	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr15:93430400-93442000	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr15:93430600-93438000	Strong transcription	HSMMtube	muscle
12	chr15:93430800-93437600	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr15:93430800-93437800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr15:93430800-93440600	Weak transcription	Aorta	Aorta
15	chr15:93430800-93442200	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:93430800-93442200	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr15:93430800-93443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr15:93431000-93438000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:93431000-93438600	Strong transcription	K562	blood
20	chr15:93431000-93442400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr15:93431600-93438000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr15:93431600-93442200	Strong transcription	Primary hematopoietic stem cells	blood
23	chr15:93431600-93442800	Strong transcription	NHDF-Ad	bronchial
24	chr15:93431600-93443000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
25	chr15:93431800-93437400	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr15:93431800-93439200	Strong transcription	Fetal Intestine Large	intestine
27	chr15:93431800-93439800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr15:93431800-93441800	Strong transcription	HSMM	muscle
29	chr15:93431800-93442000	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr15:93431800-93442200	Strong transcription	NH-A	brain
31	chr15:93431800-93442800	Strong transcription	Osteobl	bone
32	chr15:93432000-93438600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:93432000-93442400	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr15:93432200-93438000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:93432200-93438600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:93432200-93439200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr15:93432200-93439800	Strong transcription	Fetal Lung	lung
38	chr15:93432600-93437200	Strong transcription	Fetal Muscle Trunk	muscle
39	chr15:93432600-93437800	Strong transcription	Fetal Muscle Leg	muscle
40	chr15:93432600-93439200	Strong transcription	Fetal Kidney	kidney
41	chr15:93432600-93442400	Strong transcription	HUVEC	blood vessel
42	chr15:93432600-93442600	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr15:93432600-93443200	Weak transcription	Right Atrium	heart
44	chr15:93432800-93437400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr15:93432800-93437800	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr15:93432800-93438400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr15:93433000-93437000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr15:93433200-93437200	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr15:93433200-93437800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr15:93433200-93442000	Genic enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links