Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:50484423..50486164-chr10:50488112..50489860,2	K562	blood:
2	chr10:50471365..50474414-chr10:50482796..50485458,3	K562	blood:
3	chr10:50389858..50391457-chr10:50482745..50485409,2	K562	blood:
4	chr10:50389858..50392906-chr10:50482187..50485409,3	K562	blood:

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10745258	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10776552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10857457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2377967	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2377973	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2377974	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4240502	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4838380	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs4838477	0.82[AFR][1000 genomes]
rs4838488	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4838499	0.92[AMR][1000 genomes]
rs7078936	0.92[AMR][1000 genomes]
rs7082469	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7084819	0.82[AFR][1000 genomes]
rs7085282	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7088113	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7896694	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7910727	0.82[AFR][1000 genomes]
rs7917742	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50481000-50485600	Weak transcription	K562	blood
2	chr10:50481400-50486800	Weak transcription	Osteobl	bone
3	chr10:50481600-50485800	Weak transcription	Psoas Muscle	Psoas
4	chr10:50481600-50485800	Weak transcription	Right Atrium	heart
5	chr10:50481600-50486800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:50481800-50486000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr10:50481800-50486600	Weak transcription	HSMM	muscle
8	chr10:50481800-50486800	Weak transcription	NHDF-Ad	bronchial
9	chr10:50482000-50485800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr10:50482000-50486000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr10:50482000-50486000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:50482000-50486200	Weak transcription	HSMMtube	muscle
13	chr10:50482200-50487400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:50482400-50487600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:50483200-50485600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:50483200-50485800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr10:50483200-50486000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:50484200-50486800	Enhancers	Fetal Heart	heart
19	chr10:50484400-50485600	Weak transcription	Right Ventricle	heart
20	chr10:50485200-50488400	Enhancers	Left Ventricle	heart

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