Variant report

Variant	rs7088113
Chromosome Location	chr10:50488264-50488265
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50487004..50489223-chr10:50490139..50491748,2	K562	blood:
2	chr10:50486341..50490771-chr10:50506621..50509416,6	K562	blood:
3	chr10:50484423..50486164-chr10:50488112..50489860,2	K562	blood:

Variant related genes	Relation type
ENSG00000236208	Chromatin interaction
ENSG00000177354	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10745258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10776549	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10776552	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10776556	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10776559	1.00[EUR][1000 genomes]
rs10776564	1.00[EUR][1000 genomes]
rs10857457	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10857459	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2377945	1.00[EUR][1000 genomes]
rs2377947	1.00[EUR][1000 genomes]
rs2377967	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2377968	0.81[AFR][1000 genomes]
rs2377973	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2377974	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2889795	1.00[EUR][1000 genomes]
rs2889796	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4012230	1.00[EUR][1000 genomes]
rs4012231	1.00[EUR][1000 genomes]
rs4240502	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4641382	1.00[EUR][1000 genomes]
rs4838374	1.00[EUR][1000 genomes]
rs4838380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4838382	1.00[EUR][1000 genomes]
rs4838471	1.00[EUR][1000 genomes]
rs4838477	1.00[EUR][1000 genomes]
rs4838478	1.00[EUR][1000 genomes]
rs4838488	0.81[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4838499	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4838508	1.00[EUR][1000 genomes]
rs4838509	1.00[EUR][1000 genomes]
rs6537511	1.00[EUR][1000 genomes]
rs6537531	1.00[EUR][1000 genomes]
rs7068929	1.00[EUR][1000 genomes]
rs7076165	1.00[EUR][1000 genomes]
rs7078936	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7080495	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7082469	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084819	1.00[EUR][1000 genomes]
rs7085282	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7094465	1.00[EUR][1000 genomes]
rs7094900	1.00[EUR][1000 genomes]
rs7095890	1.00[EUR][1000 genomes]
rs7099166	1.00[EUR][1000 genomes]
rs74130904	1.00[EUR][1000 genomes]
rs74133121	1.00[EUR][1000 genomes]
rs74133124	1.00[EUR][1000 genomes]
rs7893653	1.00[EUR][1000 genomes]
rs7896694	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7902727	1.00[EUR][1000 genomes]
rs7910727	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7917742	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7923632	1.00[EUR][1000 genomes]
rs9663345	1.00[EUR][1000 genomes]
rs9665575	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50485200-50488400	Enhancers	Left Ventricle	heart
2	chr10:50485600-50488400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:50485600-50488400	Enhancers	Fetal Muscle Leg	muscle
4	chr10:50485600-50488400	Enhancers	Right Ventricle	heart
5	chr10:50485800-50489200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr10:50485800-50495000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr10:50486000-50490400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr10:50486400-50488400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:50486800-50489000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:50487200-50490800	Enhancers	Fetal Heart	heart
11	chr10:50487400-50490400	Weak transcription	K562	blood
12	chr10:50487600-50488400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:50487600-50488400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr10:50487800-50488800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:50488000-50488600	Enhancers	Primary hematopoietic stem cells	blood
16	chr10:50488000-50489400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:50488200-50488400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr10:50488200-50488400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr10:50488200-50489600	Weak transcription	Psoas Muscle	Psoas
20	chr10:50488200-50490400	Weak transcription	HSMMtube	muscle
21	chr10:50488200-50490600	Weak transcription	HSMM	muscle
22	chr10:50488200-50490800	Weak transcription	Right Atrium	heart
23	chr10:50488200-50492400	Weak transcription	Lung	lung

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