Variant report

Variant	rs10776559
Chromosome Location	chr10:50526403-50526404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50516625..50523164-chr10:50524827..50529904,7	K562	blood:
2	chr10:50506490..50508857-chr10:50525681..50528479,3	K562	blood:

Variant related genes	Relation type
ENSG00000236208	Chromatin interaction
ENSG00000177354	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10745258	1.00[EUR][1000 genomes]
rs10776549	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10776552	1.00[EUR][1000 genomes]
rs10776564	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10857457	1.00[EUR][1000 genomes]
rs10857459	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2377945	1.00[EUR][1000 genomes]
rs2377947	1.00[EUR][1000 genomes]
rs2377967	1.00[EUR][1000 genomes]
rs2377973	1.00[EUR][1000 genomes]
rs2377974	1.00[EUR][1000 genomes]
rs2889795	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2889796	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2889803	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4012230	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4012231	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4240502	1.00[EUR][1000 genomes]
rs4641382	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4838374	1.00[EUR][1000 genomes]
rs4838380	1.00[EUR][1000 genomes]
rs4838382	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4838385	1.00[AMR][1000 genomes]
rs4838471	1.00[EUR][1000 genomes]
rs4838477	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4838478	1.00[EUR][1000 genomes]
rs4838487	0.89[AMR][1000 genomes]
rs4838488	1.00[EUR][1000 genomes]
rs4838499	1.00[EUR][1000 genomes]
rs4838508	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4838509	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6537511	1.00[EUR][1000 genomes]
rs6537531	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7068929	1.00[EUR][1000 genomes]
rs7076165	1.00[EUR][1000 genomes]
rs7078936	1.00[EUR][1000 genomes]
rs7080495	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7082469	1.00[EUR][1000 genomes]
rs7084819	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7085282	1.00[EUR][1000 genomes]
rs7088113	1.00[EUR][1000 genomes]
rs7094465	1.00[EUR][1000 genomes]
rs7094900	1.00[EUR][1000 genomes]
rs7095573	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7095890	1.00[EUR][1000 genomes]
rs7099166	1.00[EUR][1000 genomes]
rs74130904	1.00[EUR][1000 genomes]
rs74133121	1.00[EUR][1000 genomes]
rs74133124	1.00[EUR][1000 genomes]
rs7893653	1.00[EUR][1000 genomes]
rs7896694	1.00[EUR][1000 genomes]
rs7902727	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7910727	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7917742	1.00[EUR][1000 genomes]
rs7921186	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7923632	1.00[EUR][1000 genomes]
rs9663345	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9665575	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50517200-50530600	Weak transcription	Pancreas	Pancrea
2	chr10:50522000-50526800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:50522000-50528200	Weak transcription	Right Atrium	heart
4	chr10:50523200-50528400	Weak transcription	Psoas Muscle	Psoas
5	chr10:50524600-50528600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
6	chr10:50525200-50526800	Strong transcription	Fetal Muscle Trunk	muscle
7	chr10:50525200-50529000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr10:50525800-50529000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:50526200-50526800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:50526200-50527000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:50526200-50527000	Strong transcription	Fetal Heart	heart
12	chr10:50526200-50527000	Enhancers	Spleen	Spleen
13	chr10:50526200-50527200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
14	chr10:50526200-50527400	Genic enhancers	Left Ventricle	heart
15	chr10:50526200-50527400	Strong transcription	Right Ventricle	heart
16	chr10:50526400-50527000	Enhancers	Primary B cells from cord blood	blood
17	chr10:50526400-50527000	Strong transcription	Fetal Muscle Leg	muscle
18	chr10:50526400-50527400	Strong transcription	K562	blood
19	chr10:50526400-50528400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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