Variant report
| Variant | rs4838385 |
|---|---|
| Chromosome Location | chr10:50551004-50551005 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:50506642..50508301-chr10:50549565..50551309,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000236208 | Chromatin interaction |
| ENSG00000177354 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10776549 | 0.89[AMR][1000 genomes] |
| rs10776559 | 1.00[AMR][1000 genomes] |
| rs10776564 | 0.89[AMR][1000 genomes] |
| rs10857459 | 0.89[AMR][1000 genomes] |
| rs2889795 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2889796 | 0.89[AMR][1000 genomes] |
| rs2889803 | 1.00[AMR][1000 genomes] |
| rs4012230 | 0.90[AMR][1000 genomes] |
| rs4012231 | 1.00[AMR][1000 genomes] |
| rs4641382 | 0.89[AMR][1000 genomes] |
| rs4838382 | 1.00[AMR][1000 genomes] |
| rs4838477 | 0.89[AMR][1000 genomes] |
| rs4838487 | 0.89[AMR][1000 genomes] |
| rs4838508 | 0.89[AMR][1000 genomes] |
| rs4838509 | 0.89[AMR][1000 genomes] |
| rs6537531 | 0.89[AMR][1000 genomes] |
| rs7080495 | 0.89[AMR][1000 genomes] |
| rs7084819 | 0.89[AMR][1000 genomes] |
| rs7095573 | 0.81[AMR][1000 genomes] |
| rs7902727 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7910727 | 0.89[AMR][1000 genomes] |
| rs7921186 | 0.84[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9663345 | 0.81[AMR][1000 genomes] |
| rs9665575 | 0.89[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895375 | chr10:50306386-51028871 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 2 | nsv534410 | chr10:50317458-50826916 | Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| 3 | nsv895376 | chr10:50480164-50557211 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
