Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:50531446..50534180-chr10:50539215..50542269,3	K562	blood:
2	chr10:50531692..50533298-chr10:50539270..50542163,2	K562	blood:
3	chr10:50527598..50529126-chr10:50532227..50534014,2	K562	blood:
4	chr10:50532499..50533452-chr10:50615439..50616339,3	MCF-7	breast:
5	chr10:50532596..50533234-chr10:50720810..50721429,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10776549	0.89[AMR][1000 genomes]
rs10776559	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10776564	0.89[AMR][1000 genomes]
rs10857459	0.89[AMR][1000 genomes]
rs2889795	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2889796	0.89[AMR][1000 genomes]
rs2889803	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4012230	1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes]
rs4012231	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4641382	0.89[AMR][1000 genomes]
rs4838382	1.00[LWK][hapmap];0.81[MKK][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4838385	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs4838477	0.89[AMR][1000 genomes]
rs4838487	0.89[AMR][1000 genomes]
rs4838488	0.81[MKK][hapmap];1.00[TSI][hapmap]
rs4838508	0.89[AMR][1000 genomes]
rs4838509	0.89[AMR][1000 genomes]
rs6537531	0.89[AMR][1000 genomes]
rs7078936	1.00[TSI][hapmap]
rs7080495	0.89[AMR][1000 genomes]
rs7084819	0.89[AMR][1000 genomes]
rs7095573	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7902727	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7910727	0.89[AMR][1000 genomes]
rs9663345	0.81[AMR][1000 genomes]
rs9665575	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50527400-50535800	Weak transcription	K562	blood
2	chr10:50528200-50534800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
3	chr10:50528800-50533200	Weak transcription	Psoas Muscle	Psoas
4	chr10:50529000-50532800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:50529600-50533400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
6	chr10:50531800-50533000	Strong transcription	Fetal Muscle Leg	muscle
7	chr10:50531800-50547800	Weak transcription	Pancreas	Pancrea
8	chr10:50532200-50533400	Strong transcription	Fetal Heart	heart
9	chr10:50532200-50534600	Strong transcription	Fetal Muscle Trunk	muscle
10	chr10:50532200-50537000	Weak transcription	Right Atrium	heart
11	chr10:50532400-50533800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr10:50532600-50533600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr10:50532600-50534000	Strong transcription	Left Ventricle	heart
14	chr10:50532600-50534800	Strong transcription	Right Ventricle	heart

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