Variant report

Variant	rs4838477
Chromosome Location	chr10:50470841-50470842
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10745258	1.00[EUR][1000 genomes]
rs10776549	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10776552	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10776556	0.82[AFR][1000 genomes]
rs10776559	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10776564	1.00[EUR][1000 genomes]
rs10857457	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10857459	0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2377945	1.00[EUR][1000 genomes]
rs2377947	1.00[EUR][1000 genomes]
rs2377967	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2377973	1.00[EUR][1000 genomes]
rs2377974	1.00[EUR][1000 genomes]
rs2889795	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2889796	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2889803	0.89[AMR][1000 genomes]
rs4012230	1.00[EUR][1000 genomes]
rs4012231	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4240502	1.00[EUR][1000 genomes]
rs4641382	1.00[EUR][1000 genomes]
rs4838374	1.00[EUR][1000 genomes]
rs4838380	1.00[EUR][1000 genomes]
rs4838382	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4838385	0.89[AMR][1000 genomes]
rs4838471	1.00[EUR][1000 genomes]
rs4838478	1.00[EUR][1000 genomes]
rs4838487	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4838488	1.00[EUR][1000 genomes]
rs4838499	1.00[EUR][1000 genomes]
rs4838508	1.00[EUR][1000 genomes]
rs4838509	1.00[EUR][1000 genomes]
rs6537511	1.00[EUR][1000 genomes]
rs6537531	1.00[EUR][1000 genomes]
rs7068929	1.00[EUR][1000 genomes]
rs7068959	0.81[AFR][1000 genomes]
rs7076165	1.00[EUR][1000 genomes]
rs7078936	1.00[EUR][1000 genomes]
rs7080495	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7082469	1.00[EUR][1000 genomes]
rs7084819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7085282	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7088113	1.00[EUR][1000 genomes]
rs7094465	1.00[EUR][1000 genomes]
rs7094900	1.00[EUR][1000 genomes]
rs7095890	1.00[EUR][1000 genomes]
rs7099166	1.00[EUR][1000 genomes]
rs74130904	1.00[EUR][1000 genomes]
rs74133121	1.00[EUR][1000 genomes]
rs74133124	1.00[EUR][1000 genomes]
rs7893653	1.00[EUR][1000 genomes]
rs7896694	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7902727	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7910727	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7917742	1.00[EUR][1000 genomes]
rs7921186	0.89[AMR][1000 genomes]
rs7923632	1.00[EUR][1000 genomes]
rs9663345	1.00[EUR][1000 genomes]
rs9665575	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50463000-50478800	Weak transcription	Right Atrium	heart
2	chr10:50464200-50472000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:50470200-50473000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:50470400-50471000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:50470800-50471000	Bivalent Enhancer	Placenta	Placenta
6	chr10:50470800-50471200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr10:50470800-50480800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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