Variant report

Variant	rs4838509
Chromosome Location	chr10:50572031-50572032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50567042..50568953-chr10:50570259..50573072,2	K562	blood:
2	chr10:50571360..50573134-chr10:50577043..50579272,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10745258	1.00[EUR][1000 genomes]
rs10776549	1.00[EUR][1000 genomes]
rs10776552	1.00[EUR][1000 genomes]
rs10776559	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10776564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10857457	1.00[EUR][1000 genomes]
rs10857459	1.00[EUR][1000 genomes]
rs2377939	0.89[AMR][1000 genomes]
rs2377945	1.00[EUR][1000 genomes]
rs2377947	1.00[EUR][1000 genomes]
rs2377967	1.00[EUR][1000 genomes]
rs2377973	1.00[EUR][1000 genomes]
rs2377974	1.00[EUR][1000 genomes]
rs2889795	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2889796	1.00[EUR][1000 genomes]
rs2889803	0.89[AMR][1000 genomes]
rs4012230	0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4012231	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4240502	1.00[EUR][1000 genomes]
rs4641382	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4838374	1.00[EUR][1000 genomes]
rs4838380	1.00[EUR][1000 genomes]
rs4838382	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4838385	0.89[AMR][1000 genomes]
rs4838471	1.00[EUR][1000 genomes]
rs4838477	1.00[EUR][1000 genomes]
rs4838478	1.00[EUR][1000 genomes]
rs4838488	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4838499	1.00[EUR][1000 genomes]
rs4838508	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6537511	1.00[EUR][1000 genomes]
rs6537531	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7068929	1.00[EUR][1000 genomes]
rs7076165	1.00[EUR][1000 genomes]
rs7078936	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7080495	1.00[EUR][1000 genomes]
rs7082469	1.00[EUR][1000 genomes]
rs7084819	1.00[EUR][1000 genomes]
rs7085282	1.00[EUR][1000 genomes]
rs7088113	1.00[EUR][1000 genomes]
rs7094465	1.00[EUR][1000 genomes]
rs7094900	1.00[EUR][1000 genomes]
rs7095890	1.00[EUR][1000 genomes]
rs7099166	1.00[EUR][1000 genomes]
rs74130904	1.00[EUR][1000 genomes]
rs74133121	1.00[EUR][1000 genomes]
rs74133124	1.00[EUR][1000 genomes]
rs7893653	1.00[EUR][1000 genomes]
rs7896694	1.00[EUR][1000 genomes]
rs7902727	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7910727	1.00[EUR][1000 genomes]
rs7917742	1.00[EUR][1000 genomes]
rs7921186	0.81[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes]
rs7923632	1.00[EUR][1000 genomes]
rs9663345	1.00[EUR][1000 genomes]
rs9665575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv526843	chr10:50570544-50585177	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50568800-50573400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:50569400-50575600	Weak transcription	Right Atrium	heart
3	chr10:50569600-50575800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:50569600-50577200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:50569800-50572200	Enhancers	GM12878-XiMat	blood
6	chr10:50570200-50572400	Enhancers	HepG2	liver
7	chr10:50570200-50575600	Weak transcription	Right Ventricle	heart
8	chr10:50571200-50575600	Weak transcription	Left Ventricle	heart
9	chr10:50571600-50573800	Weak transcription	Lung	lung

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