Variant report

Variant	rs10778277
Chromosome Location	chr12:104074320-104074321
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11614418	0.91[CHB][hapmap]
rs12314920	0.90[EUR][1000 genomes]
rs12368532	0.90[EUR][1000 genomes]
rs4981017	0.89[EUR][1000 genomes]
rs4981018	0.88[EUR][1000 genomes]
rs57641074	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58605677	0.89[EUR][1000 genomes]
rs696214	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs697204	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs697205	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs697206	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs697207	1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs697211	0.90[CHB][hapmap]
rs703651	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7296691	0.86[CHB][hapmap]
rs7303939	0.89[EUR][1000 genomes]
rs7304095	0.89[EUR][1000 genomes]
rs7309088	0.90[CHB][hapmap]
rs7312283	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv865	chr12:104030102-104074864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv560038	chr12:104053420-104092996	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104065800-104075200	Enhancers	Fetal Intestine Large	intestine
2	chr12:104066800-104074600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr12:104071600-104074400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:104071600-104074400	Weak transcription	Brain Germinal Matrix	brain
5	chr12:104072800-104075200	Enhancers	Fetal Brain Male	brain
6	chr12:104073000-104075800	Enhancers	Fetal Brain Female	brain
7	chr12:104073200-104074600	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr12:104073200-104074600	Enhancers	Right Atrium	heart
9	chr12:104073200-104074800	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr12:104073200-104075000	Enhancers	Fetal Stomach	stomach
11	chr12:104073200-104075000	Enhancers	Rectal Smooth Muscle	rectum
12	chr12:104073200-104075400	Enhancers	Fetal Heart	heart
13	chr12:104073400-104074800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr12:104073400-104075000	Enhancers	Colon Smooth Muscle	Colon
15	chr12:104073400-104075000	Enhancers	Fetal Intestine Small	intestine
16	chr12:104073400-104075200	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr12:104073600-104074400	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr12:104073600-104074800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr12:104073800-104074600	Enhancers	Right Ventricle	heart
20	chr12:104073800-104074800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr12:104073800-104074800	Enhancers	Spleen	Spleen
22	chr12:104073800-104075000	Enhancers	HSMMtube	muscle
23	chr12:104074000-104074800	Enhancers	Fetal Muscle Leg	muscle
24	chr12:104074000-104075200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr12:104074000-104075800	Enhancers	Stomach Smooth Muscle	stomach
26	chr12:104074200-104074400	Enhancers	Colonic Mucosa	Colon
27	chr12:104074200-104074800	Enhancers	Duodenum Mucosa	Duodenum
28	chr12:104074200-104074800	Enhancers	HSMM	muscle

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