Variant report

Variant	rs58605677
Chromosome Location	chr12:104075502-104075503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10778277	0.89[EUR][1000 genomes]
rs10861073	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10861074	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11111710	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12314920	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12368532	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1593809	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4981017	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981018	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs697202	0.84[ASN][1000 genomes]
rs7136870	0.83[ASN][1000 genomes]
rs7303939	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7304095	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560038	chr12:104053420-104092996	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104073000-104075800	Enhancers	Fetal Brain Female	brain
2	chr12:104074000-104075800	Enhancers	Stomach Smooth Muscle	stomach
3	chr12:104074800-104077800	Weak transcription	Spleen	Spleen
4	chr12:104074800-104079000	Weak transcription	Fetal Muscle Leg	muscle
5	chr12:104074800-104089400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr12:104075000-104079400	Weak transcription	Fetal Intestine Small	intestine
7	chr12:104075200-104079000	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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