Variant report

Variant	rs10861073
Chromosome Location	chr12:104072142-104072143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10861074	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11111710	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11614418	0.81[EUR][1000 genomes]
rs12314920	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12368532	1.00[CHB][hapmap];0.96[JPT][hapmap];0.96[ASN][1000 genomes]
rs1593809	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981017	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4981018	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4981031	0.83[CHB][hapmap]
rs58605677	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs697202	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7136870	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs7303939	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7304095	1.00[CHB][hapmap];0.96[JPT][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv865	chr12:104030102-104074864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv560038	chr12:104053420-104092996	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104065800-104075200	Enhancers	Fetal Intestine Large	intestine
2	chr12:104066800-104074600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr12:104068000-104073800	Weak transcription	Spleen	Spleen
4	chr12:104068400-104073200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr12:104070200-104072400	Enhancers	Fetal Intestine Small	intestine
6	chr12:104070600-104072200	Enhancers	Duodenum Mucosa	Duodenum
7	chr12:104070800-104073600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr12:104071400-104072200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
9	chr12:104071400-104074000	Weak transcription	Fetal Muscle Leg	muscle
10	chr12:104071600-104072800	Weak transcription	Fetal Brain Male	brain
11	chr12:104071600-104074400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr12:104071600-104074400	Weak transcription	Brain Germinal Matrix	brain
13	chr12:104071800-104072200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr12:104072000-104072200	Enhancers	Colonic Mucosa	Colon
15	chr12:104072000-104073800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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