Variant report

Variant	rs4981031
Chromosome Location	chr12:104090969-104090970
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10861073	0.83[CHB][hapmap]
rs12314920	0.83[CHB][hapmap];0.85[GIH][hapmap]
rs12368532	0.83[CHB][hapmap]
rs1593809	0.87[ASW][hapmap];0.82[CHB][hapmap];0.81[TSI][hapmap]
rs4981017	0.81[CHB][hapmap]
rs4981018	0.85[CHB][hapmap]
rs697202	1.00[ASW][hapmap];0.87[CHB][hapmap];0.85[GIH][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes]
rs7136870	0.87[CHB][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];0.88[AMR][1000 genomes]
rs7303939	0.83[CHB][hapmap];0.85[GIH][hapmap]
rs7304095	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560038	chr12:104053420-104092996	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4981031	GNN	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104086000-104091200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr12:104089800-104093800	Strong transcription	Spleen	Spleen
3	chr12:104090200-104097000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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