Variant report

Variant	rs697202
Chromosome Location	chr12:104080598-104080599
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10861073	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10861074	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11111710	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12314920	0.95[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs12368532	0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1593809	0.87[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4981017	0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs4981018	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs4981031	1.00[ASW][hapmap];0.87[CHB][hapmap];0.85[GIH][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes]
rs58605677	0.84[ASN][1000 genomes]
rs7136870	1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7303939	0.95[CHB][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7304095	0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560038	chr12:104053420-104092996	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs697202	EID3	cis	parietal	SCAN
rs697202	GNN	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104074800-104089400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr12:104079000-104081000	Enhancers	Fetal Intestine Large	intestine
3	chr12:104079200-104082400	Weak transcription	Fetal Muscle Leg	muscle
4	chr12:104079400-104085800	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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