Variant report

Variant	rs10778912
Chromosome Location	chr12:83201615-83201616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 149 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10047600	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10047619	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10082955	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[MEX][hapmap];1.00[ASN][1000 genomes]
rs10083084	1.00[ASN][1000 genomes]
rs10506882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778911	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778913	1.00[ASN][1000 genomes]
rs10862502	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10862503	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10862504	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10862505	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10862506	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10862507	1.00[ASN][1000 genomes]
rs10862511	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10862512	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs10862513	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115386	0.94[CEU][hapmap]
rs11115388	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11115389	1.00[ASN][1000 genomes]
rs11115390	1.00[ASN][1000 genomes]
rs11115391	1.00[ASN][1000 genomes]
rs11115392	1.00[ASN][1000 genomes]
rs11115393	1.00[ASN][1000 genomes]
rs11115396	1.00[ASN][1000 genomes]
rs11115397	1.00[ASN][1000 genomes]
rs11115398	1.00[ASN][1000 genomes]
rs11115400	1.00[ASN][1000 genomes]
rs11115403	1.00[ASN][1000 genomes]
rs11115404	1.00[ASN][1000 genomes]
rs11115405	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115406	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115407	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115408	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115409	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115411	1.00[ASN][1000 genomes]
rs11115412	1.00[ASN][1000 genomes]
rs11115413	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115414	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115416	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115418	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115430	1.00[ASN][1000 genomes]
rs11115431	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115433	1.00[ASN][1000 genomes]
rs11115434	1.00[ASN][1000 genomes]
rs11115435	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115437	1.00[ASN][1000 genomes]
rs11115445	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115446	1.00[ASN][1000 genomes]
rs11115447	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115448	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115449	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115450	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115451	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11609468	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11830781	1.00[ASN][1000 genomes]
rs11835207	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11836973	1.00[CHB][hapmap]
rs12146872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12296710	1.00[ASN][1000 genomes]
rs12304482	1.00[ASN][1000 genomes]
rs12305861	1.00[ASN][1000 genomes]
rs12305927	1.00[ASN][1000 genomes]
rs12307933	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12308668	1.00[ASN][1000 genomes]
rs12311396	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12313857	1.00[ASN][1000 genomes]
rs12317459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12320924	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369186	1.00[ASN][1000 genomes]
rs12369671	1.00[ASN][1000 genomes]
rs12370453	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12370719	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17010057	1.00[CHB][hapmap]
rs17010061	1.00[CHB][hapmap]
rs1858059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4323938	0.88[CEU][hapmap]
rs58129519	1.00[ASN][1000 genomes]
rs6539689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6539693	1.00[ASN][1000 genomes]
rs7132287	0.94[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7133916	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7295371	1.00[CHB][hapmap]
rs7296213	1.00[CHB][hapmap]
rs7299047	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7299341	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7303906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7308736	1.00[ASN][1000 genomes]
rs7310087	1.00[ASN][1000 genomes]
rs7312288	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7315215	1.00[CHB][hapmap]
rs7315531	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7315880	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7979743	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:56 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053093	chr12:82645292-83287809	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv541551	chr12:82645292-83287809	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv427917	chr12:82917031-83279712	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv469490	chr12:83089431-83507269	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv559542	chr12:83089431-83507269	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	esv2758315	chr12:83101045-83357621	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2759911	chr12:83101045-83357621	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv2755991	chr12:83105631-83248605	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv469491	chr12:83108395-83203742	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv559543	chr12:83108395-83203742	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv2754173	chr12:83125000-83245838	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv2754509	chr12:83133090-83203742	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv999149	chr12:83137872-83206342	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	nsv1041674	chr12:83162082-83207782	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	esv2754376	chr12:83166800-83203742	Bivalent Enhancer Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
17	nsv1037678	chr12:83166800-83207782	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	esv2760932	chr12:83166800-83208125	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
19	nsv1046528	chr12:83166800-83215381	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
20	esv1003105	chr12:83166821-83213521	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	esv2754616	chr12:83166956-83203742	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
22	nsv899350	chr12:83166956-83203742	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
23	nsv559544	chr12:83166956-83206342	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
24	nsv1040659	chr12:83166956-83207782	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
25	nsv899351	chr12:83166956-83220039	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
26	esv2756046	chr12:83166956-83245838	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
27	esv2755875	chr12:83166956-83248605	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
28	nsv430520	chr12:83166956-83271602	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
29	esv1008090	chr12:83167353-83212805	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
30	nsv1051173	chr12:83168049-83203602	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
31	nsv1038818	chr12:83168049-83203742	ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
32	nsv1036837	chr12:83168049-83206208	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
33	nsv1041180	chr12:83168049-83207782	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
34	esv992885	chr12:83168049-83207794	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
35	nsv1044111	chr12:83168049-83215381	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
36	esv2757513	chr12:83168113-83201615	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
37	esv2752585	chr12:83168113-83203742	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
38	esv2755644	chr12:83168113-83203742	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
39	nsv1035729	chr12:83168113-83207782	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
40	esv30004	chr12:83168113-83208383	Enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
41	esv2752707	chr12:83168113-83245838	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
42	esv2753376	chr12:83168113-83245838	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
43	esv2754178	chr12:83168113-83245838	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
44	nsv559548	chr12:83168616-83205152	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
45	nsv516625	chr12:83168616-83206342	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
46	nsv469492	chr12:83168616-83206342	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
47	nsv559549	chr12:83168616-83206342	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
48	nsv818928	chr12:83168616-83206342	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
49	nsv559550	chr12:83168616-83220004	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
50	nsv559551	chr12:83168616-83220039	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83179800-83211000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr12:83190200-83207800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr12:83191200-83205800	Weak transcription	Colon Smooth Muscle	Colon
4	chr12:83191400-83203200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr12:83193600-83219000	Weak transcription	Brain Angular Gyrus	brain
6	chr12:83194200-83219600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr12:83194800-83207800	Weak transcription	Fetal Lung	lung
8	chr12:83195200-83208800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr12:83195400-83207800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr12:83196400-83250800	Weak transcription	Fetal Muscle Leg	muscle
11	chr12:83197600-83208600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr12:83197600-83208800	Weak transcription	Fetal Stomach	stomach
13	chr12:83197600-83213800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr12:83198800-83207600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr12:83198800-83207800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr12:83198800-83208200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr12:83199400-83201800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr12:83200400-83212400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:83200800-83203400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:83201400-83203800	Weak transcription	Brain Substantia Nigra	brain
21	chr12:83201400-83212200	Weak transcription	Brain Anterior Caudate	brain
22	chr12:83201600-83203000	Weak transcription	Brain Hippocampus Middle	brain
23	chr12:83201600-83203400	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links