Variant report

Variant	rs12146872
Chromosome Location	chr12:83208125-83208126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10047600	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10047619	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10082955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10083084	1.00[ASN][1000 genomes]
rs10506882	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778911	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778912	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778913	1.00[ASN][1000 genomes]
rs10862502	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10862503	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10862504	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10862505	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10862506	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10862507	1.00[ASN][1000 genomes]
rs10862511	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10862512	0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10862513	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115386	0.94[CEU][hapmap]
rs11115388	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11115389	1.00[ASN][1000 genomes]
rs11115390	1.00[ASN][1000 genomes]
rs11115391	1.00[ASN][1000 genomes]
rs11115392	1.00[ASN][1000 genomes]
rs11115393	1.00[ASN][1000 genomes]
rs11115396	1.00[ASN][1000 genomes]
rs11115397	1.00[ASN][1000 genomes]
rs11115398	1.00[ASN][1000 genomes]
rs11115400	1.00[ASN][1000 genomes]
rs11115403	1.00[ASN][1000 genomes]
rs11115404	1.00[ASN][1000 genomes]
rs11115405	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115406	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115407	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115408	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115409	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115411	1.00[ASN][1000 genomes]
rs11115412	1.00[ASN][1000 genomes]
rs11115413	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115414	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115416	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115418	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115430	1.00[ASN][1000 genomes]
rs11115431	1.00[CHB][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs11115433	1.00[ASN][1000 genomes]
rs11115434	1.00[ASN][1000 genomes]
rs11115435	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115437	1.00[ASN][1000 genomes]
rs11115445	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115446	1.00[ASN][1000 genomes]
rs11115447	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115448	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115449	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115450	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11115451	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11609468	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11830781	1.00[ASN][1000 genomes]
rs11835207	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11836973	1.00[CHB][hapmap]
rs12296710	1.00[ASN][1000 genomes]
rs12304482	1.00[ASN][1000 genomes]
rs12305861	1.00[ASN][1000 genomes]
rs12305927	1.00[ASN][1000 genomes]
rs12307933	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12308668	1.00[ASN][1000 genomes]
rs12311396	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12313857	1.00[ASN][1000 genomes]
rs12317459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12320924	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369186	1.00[ASN][1000 genomes]
rs12369671	1.00[ASN][1000 genomes]
rs12370453	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12370719	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17010057	1.00[CHB][hapmap]
rs17010061	1.00[CHB][hapmap]
rs1858059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4323938	0.89[CEU][hapmap]
rs58129519	1.00[ASN][1000 genomes]
rs6539689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6539693	1.00[ASN][1000 genomes]
rs7132287	0.94[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7133916	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7295371	1.00[CHB][hapmap]
rs7296213	1.00[CHB][hapmap]
rs7299047	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7299341	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7303906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7308736	1.00[ASN][1000 genomes]
rs7310087	1.00[ASN][1000 genomes]
rs7312288	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7315215	1.00[CHB][hapmap]
rs7315531	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7315880	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7979743	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053093	chr12:82645292-83287809	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv541551	chr12:82645292-83287809	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv427917	chr12:82917031-83279712	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv469490	chr12:83089431-83507269	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv559542	chr12:83089431-83507269	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	esv2758315	chr12:83101045-83357621	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2759911	chr12:83101045-83357621	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv2755991	chr12:83105631-83248605	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv2754173	chr12:83125000-83245838	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv2760932	chr12:83166800-83208125	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	nsv1046528	chr12:83166800-83215381	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv1003105	chr12:83166821-83213521	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	nsv899351	chr12:83166956-83220039	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	esv2756046	chr12:83166956-83245838	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	esv2755875	chr12:83166956-83248605	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
17	nsv430520	chr12:83166956-83271602	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	esv1008090	chr12:83167353-83212805	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
19	nsv1044111	chr12:83168049-83215381	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
20	esv30004	chr12:83168113-83208383	Enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	esv2752707	chr12:83168113-83245838	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
22	esv2753376	chr12:83168113-83245838	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
23	esv2754178	chr12:83168113-83245838	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
24	nsv559550	chr12:83168616-83220004	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
25	nsv559551	chr12:83168616-83220039	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
26	nsv559552	chr12:83168616-83225174	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
27	esv999382	chr12:83168826-83213129	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
28	nsv1054974	chr12:83169263-83219362	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83179800-83211000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr12:83193600-83219000	Weak transcription	Brain Angular Gyrus	brain
3	chr12:83194200-83219600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr12:83195200-83208800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr12:83196400-83250800	Weak transcription	Fetal Muscle Leg	muscle
6	chr12:83197600-83208600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr12:83197600-83208800	Weak transcription	Fetal Stomach	stomach
8	chr12:83197600-83213800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:83198800-83208200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:83200400-83212400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr12:83201400-83212200	Weak transcription	Brain Anterior Caudate	brain
12	chr12:83203800-83208200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr12:83203800-83211800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr12:83204600-83211400	Weak transcription	Brain Hippocampus Middle	brain
15	chr12:83206600-83250000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr12:83206600-83255200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr12:83206800-83212400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:83207200-83211200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr12:83207200-83211200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr12:83207200-83211400	Weak transcription	Fetal Heart	heart
21	chr12:83207400-83211200	Weak transcription	Colon Smooth Muscle	Colon
22	chr12:83207600-83208400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr12:83207600-83208400	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr12:83207800-83208400	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr12:83207800-83208400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr12:83207800-83208400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr12:83207800-83208400	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr12:83207800-83208400	Enhancers	HUVEC	blood vessel
29	chr12:83207800-83208400	Genic enhancers	Monocytes-CD14+_RO01746	blood
30	chr12:83207800-83208800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr12:83207800-83209800	Strong transcription	Fetal Lung	lung
32	chr12:83208000-83211600	Weak transcription	Brain Substantia Nigra	brain

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