Variant report

Variant	rs10780550
Chromosome Location	chr9:85211091-85211092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10125742	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10217175	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10429569	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10512134	0.89[EUR][1000 genomes]
rs10867869	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1412523	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs565634	0.86[EUR][1000 genomes]
rs868395	0.81[ASN][1000 genomes]
rs944681	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85199600-85215400	Weak transcription	Pancreas	Pancrea
2	chr9:85204600-85212200	Weak transcription	Fetal Kidney	kidney
3	chr9:85209000-85213200	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:85210000-85212000	Enhancers	HepG2	liver
5	chr9:85210400-85211600	Weak transcription	Fetal Intestine Small	intestine
6	chr9:85210600-85218400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:85210800-85212200	Weak transcription	Fetal Lung	lung
8	chr9:85211000-85211200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:85211000-85212200	Weak transcription	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links