Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10125742	0.86[EUR][1000 genomes]
rs10217175	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10429569	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10512134	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10780550	0.86[EUR][1000 genomes]
rs10867869	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10867870	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1412523	0.85[EUR][1000 genomes]
rs479375	0.83[ASN][1000 genomes]
rs556689	0.83[ASN][1000 genomes]
rs569518	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs583597	0.83[ASN][1000 genomes]
rs595666	0.83[ASN][1000 genomes]
rs599817	0.84[ASN][1000 genomes]
rs631785	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs635714	0.84[ASN][1000 genomes]
rs654629	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6559681	0.87[CHB][hapmap]
rs667567	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7856840	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs944681	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85310400-85312400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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