Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10512134	0.81[ASN][1000 genomes]
rs10746687	0.80[EUR][1000 genomes]
rs10746688	0.83[EUR][1000 genomes]
rs10867866	0.80[EUR][1000 genomes]
rs10867868	0.80[EUR][1000 genomes]
rs11139718	0.82[EUR][1000 genomes]
rs11139719	0.83[EUR][1000 genomes]
rs11139720	0.84[EUR][1000 genomes]
rs12683452	0.82[EUR][1000 genomes]
rs1332471	0.80[EUR][1000 genomes]
rs479375	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs493701	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs509091	0.81[EUR][1000 genomes]
rs534724	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs556689	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs565634	0.84[ASN][1000 genomes]
rs583597	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs595666	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs599817	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs609444	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs631785	0.93[ASN][1000 genomes]
rs6559681	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs682894	0.84[EUR][1000 genomes]
rs7047996	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7869543	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs635714	PSAT1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85322600-85327400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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