Variant report

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10746688	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11139718	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139719	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139720	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12683452	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs479375	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs485522	0.94[AFR][1000 genomes]
rs531845	0.94[AFR][1000 genomes]
rs534724	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs556689	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs564058	0.94[AFR][1000 genomes]
rs581711	0.80[EUR][1000 genomes]
rs583597	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs595666	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs599817	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs635714	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6559681	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7047996	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7869543	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85345000-85349200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:85346000-85351400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:85347000-85348600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr9:85347200-85348200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr9:85347200-85348400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr9:85347200-85348400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr9:85347200-85348400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:85347200-85348400	Enhancers	Fetal Muscle Leg	muscle
9	chr9:85347200-85352200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:85347200-85353000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr9:85347400-85348000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr9:85347400-85348200	Enhancers	Dnd41	blood
13	chr9:85347400-85348400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr9:85347400-85348400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:85347400-85348600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr9:85347600-85348000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:85347600-85348200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr9:85347600-85348200	Enhancers	Primary hematopoietic stem cells	blood
19	chr9:85347600-85348400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr9:85347600-85353400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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