Variant report

Variant	rs599817
Chromosome Location	chr9:85327803-85327804
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10512134	0.81[ASN][1000 genomes]
rs10746688	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11139718	0.96[EUR][1000 genomes]
rs11139719	0.97[EUR][1000 genomes]
rs11139720	0.98[EUR][1000 genomes]
rs12683452	0.94[EUR][1000 genomes]
rs479375	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs534724	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs556689	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs565634	0.84[ASN][1000 genomes]
rs581711	0.82[EUR][1000 genomes]
rs583597	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs595666	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs609444	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs631785	0.93[ASN][1000 genomes]
rs635714	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6559681	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7047996	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7869543	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85327400-85329000	Strong transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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