Variant report

Variant	rs631785
Chromosome Location	chr9:85322324-85322325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10217175	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10429569	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10512134	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10867869	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs479375	0.92[ASN][1000 genomes]
rs556689	0.92[ASN][1000 genomes]
rs565634	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs583597	0.92[ASN][1000 genomes]
rs595666	0.92[ASN][1000 genomes]
rs599817	0.93[ASN][1000 genomes]
rs635714	0.93[ASN][1000 genomes]
rs6559681	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs944681	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs631785	PSAT1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85321400-85322600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr9:85321400-85322600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr9:85321600-85322400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr9:85321600-85322600	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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