Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85330917..85333496-chr9:85333514..85335899,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10512134	0.80[ASN][1000 genomes]
rs10746688	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11139718	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11139719	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11139720	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12683452	0.85[EUR][1000 genomes]
rs4877702	0.80[EUR][1000 genomes]
rs4877703	0.80[EUR][1000 genomes]
rs534724	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs556689	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565634	0.83[ASN][1000 genomes]
rs574896	0.89[AFR][1000 genomes]
rs581711	0.87[AFR][1000 genomes]
rs583597	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595666	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs599817	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs609444	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs617565	0.82[EUR][1000 genomes]
rs631785	0.92[ASN][1000 genomes]
rs635714	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6559681	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7047996	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7869543	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3335003	chr9:85334825-85335012	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85330400-85335600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:85331800-85345000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:85334800-85336400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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