Variant report
| Variant | rs682894 |
|---|---|
| Chromosome Location | chr9:85310340-85310341 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10746687 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10867866 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10867867 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10867868 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10867870 | 0.93[ASN][1000 genomes] |
| rs11139684 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11139688 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1332471 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4877702 | 0.80[EUR][1000 genomes] |
| rs4877703 | 0.80[EUR][1000 genomes] |
| rs4877704 | 0.84[EUR][1000 genomes] |
| rs493701 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs509091 | 0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs533106 | 0.86[EUR][1000 genomes] |
| rs540014 | 0.83[EUR][1000 genomes] |
| rs569518 | 1.00[ASN][1000 genomes] |
| rs574979 | 0.81[EUR][1000 genomes] |
| rs581729 | 0.86[EUR][1000 genomes] |
| rs617565 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs635714 | 0.84[EUR][1000 genomes] |
| rs654629 | 1.00[ASN][1000 genomes] |
| rs6559679 | 0.84[EUR][1000 genomes] |
| rs667567 | 1.00[ASN][1000 genomes] |
| rs667947 | 1.00[ASN][1000 genomes] |
| rs668853 | 1.00[ASN][1000 genomes] |
| rs668906 | 1.00[ASN][1000 genomes] |
| rs682525 | 1.00[ASN][1000 genomes] |
| rs7856840 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428539 | chr9:85240027-85402367 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:85310200-85310400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
