Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10746687	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10867866	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10867867	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10867868	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10867870	0.96[ASN][1000 genomes]
rs11139684	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1332471	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4877704	0.80[EUR][1000 genomes]
rs493701	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs509091	0.86[EUR][1000 genomes]
rs533106	0.82[EUR][1000 genomes]
rs569518	0.96[ASN][1000 genomes]
rs581729	0.82[EUR][1000 genomes]
rs617565	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs654629	0.96[ASN][1000 genomes]
rs6559679	0.80[EUR][1000 genomes]
rs667567	0.96[ASN][1000 genomes]
rs667947	0.96[ASN][1000 genomes]
rs668853	0.96[ASN][1000 genomes]
rs668906	0.96[ASN][1000 genomes]
rs682525	0.96[ASN][1000 genomes]
rs682894	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7856840	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3367559	chr9:85295394-85295969	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85293000-85297400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:85295200-85295800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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