Variant report
| Variant | rs7856840 |
|---|---|
| Chromosome Location | chr9:85288745-85288746 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10217175 | 0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10429569 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10512134 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10746687 | 0.97[ASN][1000 genomes] |
| rs10867866 | 0.98[ASN][1000 genomes] |
| rs10867867 | 0.97[ASN][1000 genomes] |
| rs10867868 | 0.97[ASN][1000 genomes] |
| rs10867869 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10867870 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11139684 | 0.97[ASN][1000 genomes] |
| rs11139688 | 0.97[ASN][1000 genomes] |
| rs1332471 | 0.97[ASN][1000 genomes] |
| rs493701 | 0.89[ASN][1000 genomes] |
| rs565634 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs569518 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs617565 | 0.89[ASN][1000 genomes] |
| rs654629 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs667567 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs667947 | 0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs668853 | 0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs668906 | 0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs682525 | 0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs682894 | 0.93[ASN][1000 genomes] |
| rs944681 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831641 | chr9:85145561-85309589 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv428539 | chr9:85240027-85402367 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7856840 | PSAT1 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:85284000-85288800 | Weak transcription | Fetal Lung | lung |
| 2 | chr9:85288400-85289400 | Enhancers | Pancreatic Islets | Pancreatic Islet |
