Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10746687	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10867866	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10867867	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10867868	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10867870	0.89[ASN][1000 genomes]
rs11139684	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11139688	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1332471	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4877702	0.81[EUR][1000 genomes]
rs4877703	0.81[EUR][1000 genomes]
rs4877704	0.85[EUR][1000 genomes]
rs509091	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs533106	0.87[EUR][1000 genomes]
rs540014	0.84[EUR][1000 genomes]
rs569518	0.96[ASN][1000 genomes]
rs574979	0.82[EUR][1000 genomes]
rs581729	0.87[EUR][1000 genomes]
rs617565	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs635714	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs654629	0.96[ASN][1000 genomes]
rs6559679	0.85[EUR][1000 genomes]
rs667567	0.96[ASN][1000 genomes]
rs667947	0.96[ASN][1000 genomes]
rs668853	0.96[ASN][1000 genomes]
rs668906	0.96[ASN][1000 genomes]
rs682525	0.96[ASN][1000 genomes]
rs682894	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7856840	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs493701	PSAT1	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85321400-85322000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr9:85321400-85322200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr9:85321400-85322600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr9:85321400-85322600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:85321600-85322000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr9:85321600-85322000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:85321600-85322200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:85321600-85322400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:85321600-85322600	Enhancers	HUES6 Cell Line	embryonic stem cell

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