Variant report

Variant	rs540014
Chromosome Location	chr9:85343495-85343496
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10746687	0.80[EUR][1000 genomes]
rs10867868	0.80[EUR][1000 genomes]
rs1332471	0.80[EUR][1000 genomes]
rs472867	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs477678	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs485522	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs487454	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877702	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4877703	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4877704	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs493701	0.84[EUR][1000 genomes]
rs502630	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs503589	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs504407	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs509053	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs509091	0.91[EUR][1000 genomes]
rs514224	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs514471	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs516033	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518662	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs531845	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs533106	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs536317	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555869	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs564058	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs574896	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs574979	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs581711	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs581729	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs617565	0.83[EUR][1000 genomes]
rs6559679	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs682894	0.83[EUR][1000 genomes]
rs7043569	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85331800-85345000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:85336000-85344800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:85336400-85344600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr9:85337200-85344800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:85337400-85344800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:85337400-85345000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:85340200-85344800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:85342000-85347400	Weak transcription	Dnd41	blood

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