Variant report

Variant	rs533106
Chromosome Location	chr9:85333362-85333363
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85330917..85333496-chr9:85333514..85335899,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10746687	0.83[EUR][1000 genomes]
rs10867866	0.82[EUR][1000 genomes]
rs10867867	0.82[EUR][1000 genomes]
rs10867868	0.83[EUR][1000 genomes]
rs11139684	0.82[EUR][1000 genomes]
rs11139688	0.82[EUR][1000 genomes]
rs1332471	0.83[EUR][1000 genomes]
rs472867	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs477678	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs485522	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs487454	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4877702	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4877703	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4877704	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs493701	0.87[EUR][1000 genomes]
rs502630	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs503589	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs504407	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs509053	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs509091	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs514224	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs514471	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs516033	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs518662	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs531845	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs536317	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs540014	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs555869	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs564058	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs574896	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs574979	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs581711	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs581729	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs617565	0.82[EUR][1000 genomes]
rs6559679	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs682894	0.86[EUR][1000 genomes]
rs7043569	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85330400-85335600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:85331800-85345000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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