Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85282511..85284570-chr9:85285371..85288222,2	MCF-7	breast:
2	chr9:85285079..85287989-chr9:85291433..85293690,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10746687	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10867866	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10867868	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10867870	0.98[ASN][1000 genomes]
rs11139684	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139688	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1332471	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17304313	0.81[AMR][1000 genomes]
rs4877704	0.80[EUR][1000 genomes]
rs493701	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs509091	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs533106	0.82[EUR][1000 genomes]
rs569518	0.96[ASN][1000 genomes]
rs581729	0.82[EUR][1000 genomes]
rs617565	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62579067	0.81[AMR][1000 genomes]
rs654629	0.96[ASN][1000 genomes]
rs6559679	0.80[EUR][1000 genomes]
rs667567	0.96[ASN][1000 genomes]
rs667947	0.96[ASN][1000 genomes]
rs668853	0.96[ASN][1000 genomes]
rs668906	0.96[ASN][1000 genomes]
rs682525	0.96[ASN][1000 genomes]
rs682894	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7856840	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10867867	PSAT1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85283400-85288400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:85284000-85288800	Weak transcription	Fetal Lung	lung

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