Variant report

Variant	rs62579067
Chromosome Location	chr9:85215521-85215522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85207122..85209634-chr9:85214499..85216722,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10867866	0.80[AMR][1000 genomes]
rs10867867	0.81[AMR][1000 genomes]
rs11139612	0.81[AMR][1000 genomes]
rs11139613	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11139616	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11139660	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139684	0.81[AMR][1000 genomes]
rs1537302	0.93[ASN][1000 genomes]
rs17304313	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1933015	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35538329	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85210600-85218400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:85211600-85216400	Enhancers	Fetal Intestine Small	intestine
3	chr9:85212200-85216600	Enhancers	Rectal Smooth Muscle	rectum
4	chr9:85212200-85217200	Enhancers	Colon Smooth Muscle	Colon
5	chr9:85212200-85217400	Enhancers	Fetal Stomach	stomach
6	chr9:85213000-85216600	Enhancers	Liver	Liver
7	chr9:85213400-85221000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:85213800-85215800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:85214000-85215600	Weak transcription	Fetal Lung	lung
10	chr9:85214000-85216800	Enhancers	Fetal Kidney	kidney
11	chr9:85214400-85215800	Enhancers	Stomach Smooth Muscle	stomach
12	chr9:85214400-85216600	Enhancers	Fetal Intestine Large	intestine
13	chr9:85214600-85216000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:85214600-85216400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:85214600-85216400	Enhancers	Fetal Muscle Leg	muscle
16	chr9:85215200-85215600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr9:85215200-85215800	Active TSS	HepG2	liver
18	chr9:85215400-85216000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:85215400-85216200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:85215400-85216200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:85215400-85216200	Bivalent Enhancer	Stomach Mucosa	stomach
22	chr9:85215400-85216400	Enhancers	Pancreas	Pancrea
23	chr9:85215400-85216400	Enhancers	Placenta Amnion	Placenta Amnion
24	chr9:85215400-85216600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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