Variant report

Variant	rs1933015
Chromosome Location	chr9:85175417-85175418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11139612	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11139613	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11139616	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17304313	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35538329	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62579067	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6559672	0.89[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85170000-85176800	Enhancers	HepG2	liver
2	chr9:85170800-85177000	Enhancers	Stomach Mucosa	stomach
3	chr9:85172000-85176000	Enhancers	Liver	Liver
4	chr9:85173200-85175800	Enhancers	Fetal Intestine Large	intestine
5	chr9:85173400-85175600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr9:85173400-85175800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr9:85173400-85175800	Enhancers	Fetal Intestine Small	intestine
8	chr9:85173800-85175800	Enhancers	Fetal Lung	lung
9	chr9:85174600-85178400	Weak transcription	Fetal Kidney	kidney
10	chr9:85174800-85175800	Enhancers	Pancreas	Pancrea
11	chr9:85175000-85176000	Enhancers	Primary hematopoietic stem cells	blood
12	chr9:85175000-85176000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr9:85175000-85180200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:85175400-85175800	Enhancers	Fetal Thymus	thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links