Variant report

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10867866	0.80[AMR][1000 genomes]
rs10867867	0.81[AMR][1000 genomes]
rs11139612	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11139613	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11139616	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11139660	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11139684	0.81[AMR][1000 genomes]
rs1537302	0.90[ASN][1000 genomes]
rs1933015	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35538329	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62579067	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85199600-85215400	Weak transcription	Pancreas	Pancrea
2	chr9:85209000-85213200	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:85210600-85218400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:85211200-85214200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:85211400-85212800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:85211600-85213800	Enhancers	Fetal Intestine Large	intestine
7	chr9:85211600-85216400	Enhancers	Fetal Intestine Small	intestine
8	chr9:85211800-85213400	Enhancers	Stomach Mucosa	stomach
9	chr9:85212000-85212800	Flanking Active TSS	HepG2	liver
10	chr9:85212200-85212800	Enhancers	Small Intestine	intestine
11	chr9:85212200-85213000	Flanking Active TSS	Liver	Liver
12	chr9:85212200-85213400	Enhancers	Fetal Heart	heart
13	chr9:85212200-85213400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr9:85212200-85213600	Enhancers	Fetal Kidney	kidney
15	chr9:85212200-85216600	Enhancers	Rectal Smooth Muscle	rectum
16	chr9:85212200-85217200	Enhancers	Colon Smooth Muscle	Colon
17	chr9:85212200-85217400	Enhancers	Fetal Stomach	stomach
18	chr9:85212400-85213200	Active TSS	Stomach Smooth Muscle	stomach
19	chr9:85212400-85213200	Enhancers	NH-A	brain
20	chr9:85212600-85212800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:85212600-85212800	Flanking Active TSS	Fetal Lung	lung
22	chr9:85212600-85214000	Enhancers	Ovary	ovary
23	chr9:85212600-85215200	Enhancers	Pancreatic Islets	Pancreatic Islet

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