Variant report

Variant	rs35538329
Chromosome Location	chr9:85202007-85202008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11139612	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11139613	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11139616	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11139660	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1537302	0.89[ASN][1000 genomes]
rs17304313	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1933015	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62579067	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85195200-85205000	Enhancers	Fetal Intestine Large	intestine
2	chr9:85195600-85205200	Enhancers	HepG2	liver
3	chr9:85198800-85202800	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:85199400-85203200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:85199600-85215400	Weak transcription	Pancreas	Pancrea
6	chr9:85200000-85203800	Weak transcription	Liver	Liver
7	chr9:85200000-85203800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr9:85200000-85208400	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:85200800-85205200	Enhancers	Fetal Intestine Small	intestine
10	chr9:85201800-85205200	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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