Variant report

Variant	rs1412523
Chromosome Location	chr9:85217081-85217082
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10125742	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217175	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10429569	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10512134	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10780550	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10867869	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs565634	0.85[EUR][1000 genomes]
rs6559681	0.83[JPT][hapmap]
rs944681	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85210600-85218400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:85212200-85217200	Enhancers	Colon Smooth Muscle	Colon
3	chr9:85212200-85217400	Enhancers	Fetal Stomach	stomach
4	chr9:85213400-85221000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr9:85215600-85217200	Enhancers	Fetal Heart	heart
6	chr9:85216000-85219600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:85216000-85220600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:85216200-85217600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:85216200-85219600	Weak transcription	Fetal Lung	lung
10	chr9:85216200-85220800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:85216400-85217200	Enhancers	Stomach Smooth Muscle	stomach
12	chr9:85216400-85218000	Weak transcription	Pancreas	Pancrea
13	chr9:85216400-85219600	Weak transcription	Fetal Intestine Small	intestine
14	chr9:85216400-85219800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:85216400-85219800	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:85216600-85219600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:85216600-85219600	Weak transcription	Liver	Liver
18	chr9:85216600-85219600	Weak transcription	Fetal Intestine Large	intestine
19	chr9:85216600-85220000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:85216800-85217200	Weak transcription	Fetal Kidney	kidney
21	chr9:85216800-85219800	Enhancers	HepG2	liver

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