Variant report

Variant	rs10780597
Chromosome Location	chr9:85961027-85961028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10441792	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746700	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746701	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746702	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746703	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780596	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780601	0.82[EUR][1000 genomes]
rs10867995	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10867998	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10867999	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868000	0.92[EUR][1000 genomes]
rs10868001	0.92[EUR][1000 genomes]
rs11140040	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11140041	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140045	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11140046	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140054	0.92[EUR][1000 genomes]
rs11140056	0.92[EUR][1000 genomes]
rs12348065	0.82[EUR][1000 genomes]
rs12350022	0.82[EUR][1000 genomes]
rs13300839	0.84[EUR][1000 genomes]
rs13439910	0.92[EUR][1000 genomes]
rs1536888	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536889	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2375886	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34767126	0.83[EUR][1000 genomes]
rs35469709	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35498149	0.92[EUR][1000 genomes]
rs3860903	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3915916	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877252	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877253	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62560269	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85937400-85998000	Weak transcription	Aorta	Aorta
2	chr9:85942600-85970200	Weak transcription	Psoas Muscle	Psoas
3	chr9:85943400-85961600	Weak transcription	Adipose Nuclei	Adipose
4	chr9:85943400-85964400	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:85946200-85963800	Weak transcription	Fetal Brain Female	brain
6	chr9:85950200-85976000	Weak transcription	HepG2	liver
7	chr9:85955400-85964000	Weak transcription	Ovary	ovary
8	chr9:85956200-85986600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr9:85958200-85961800	Weak transcription	NHDF-Ad	bronchial
10	chr9:85958200-85980600	Weak transcription	Left Ventricle	heart
11	chr9:85958200-86007600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:85958800-85963800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:85959000-85963800	Weak transcription	Fetal Heart	heart
14	chr9:85960800-85961600	Enhancers	Skeletal Muscle Female	skeletal muscle

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