Variant report

Variant	rs10780601
Chromosome Location	chr9:86000775-86000776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85997879..86001519-chr9:86002024..86006738,6	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10441792	0.92[CEU][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs10512140	0.91[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10746700	0.83[EUR][1000 genomes]
rs10746701	0.83[EUR][1000 genomes]
rs10746702	0.83[EUR][1000 genomes]
rs10746703	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs10746705	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10780596	0.96[CEU][hapmap];0.89[GIH][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs10780597	0.82[EUR][1000 genomes]
rs10867995	0.83[EUR][1000 genomes]
rs10867998	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10867999	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs10868000	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.90[TSI][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10868001	0.96[CEU][hapmap];0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11140040	0.83[EUR][1000 genomes]
rs11140041	0.96[CEU][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11140045	0.96[CEU][hapmap];0.86[GIH][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs11140046	0.96[CEU][hapmap];0.86[GIH][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs11140054	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11140056	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12348065	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12350022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352281	0.85[YRI][hapmap]
rs13300839	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13439910	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[LWK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1536888	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs1536889	0.96[CEU][hapmap];0.89[GIH][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs2375886	0.82[ASW][hapmap];0.96[CEU][hapmap];0.86[GIH][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs34767126	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35469709	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35498149	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3860903	0.82[ASW][hapmap];0.96[CEU][hapmap];0.86[GIH][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs3915916	0.96[CEU][hapmap];0.86[GIH][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4877252	0.83[EUR][1000 genomes]
rs4877253	0.96[CEU][hapmap];0.86[GIH][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs62560269	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7851145	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85958200-86007600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:85998800-86004200	Weak transcription	Left Ventricle	heart
3	chr9:85998800-86008600	Weak transcription	Pancreas	Pancrea
4	chr9:85999400-86001200	Enhancers	NHDF-Ad	bronchial
5	chr9:85999400-86008400	Weak transcription	Aorta	Aorta
6	chr9:85999800-86001200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:86000000-86005800	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:86000000-86006600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr9:86000000-86020600	Weak transcription	Fetal Brain Female	brain
10	chr9:86000400-86005600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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