Variant report

Variant	rs10780753
Chromosome Location	chr9:72636594-72636595
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10868365	0.95[ASN][1000 genomes]
rs10868386	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10868387	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10868403	0.95[AFR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10868404	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11141205	0.97[ASN][1000 genomes]
rs11141248	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11141303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12238553	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1493056	0.90[ASN][1000 genomes]
rs951770	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv415477	chr9:72629228-72637760	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72634800-72637200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:72634800-72637200	Enhancers	Fetal Lung	lung
3	chr9:72634800-72637400	Enhancers	NHEK	skin
4	chr9:72634800-72637600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr9:72634800-72637600	Enhancers	HMEC	breast
6	chr9:72635200-72636800	Enhancers	NHDF-Ad	bronchial
7	chr9:72635200-72637200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:72635200-72637200	Enhancers	NHLF	lung
9	chr9:72635200-72637600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr9:72635200-72637600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:72635200-72637600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:72635200-72637600	Enhancers	Brain Germinal Matrix	brain
13	chr9:72635400-72636800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:72635400-72637200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:72635400-72637200	Enhancers	HSMM	muscle
16	chr9:72635400-72637200	Enhancers	Osteobl	bone
17	chr9:72635400-72640000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:72635600-72636800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:72635600-72637000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:72635600-72638800	Weak transcription	Pancreas	Pancrea
21	chr9:72635800-72636600	Enhancers	Brain Substantia Nigra	brain
22	chr9:72635800-72636800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:72635800-72637200	Enhancers	Brain Hippocampus Middle	brain
24	chr9:72635800-72637200	Enhancers	HUVEC	blood vessel
25	chr9:72636000-72637000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:72636000-72637600	Enhancers	Brain Anterior Caudate	brain
27	chr9:72636000-72637600	Enhancers	NH-A	brain
28	chr9:72636200-72636600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:72636200-72637200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr9:72636400-72636600	Enhancers	Fetal Brain Female	brain
31	chr9:72636400-72637000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:72636400-72637400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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