Variant report

Variant	rs10868365
Chromosome Location	chr9:72621005-72621006
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10780753	0.95[ASN][1000 genomes]
rs10868386	0.94[ASN][1000 genomes]
rs10868387	0.94[ASN][1000 genomes]
rs10868403	0.85[ASN][1000 genomes]
rs10868404	0.85[ASN][1000 genomes]
rs11141205	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11141248	0.97[ASN][1000 genomes]
rs11141303	0.95[ASN][1000 genomes]
rs12238553	0.95[ASN][1000 genomes]
rs1493056	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs951770	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72612400-72622600	Weak transcription	NHEK	skin
2	chr9:72618600-72622000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:72619200-72622000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:72619600-72622600	Weak transcription	HMEC	breast
5	chr9:72619600-72623200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:72619600-72624800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr9:72619800-72626200	Weak transcription	HSMM	muscle
8	chr9:72619800-72627600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:72620400-72621800	Enhancers	Fetal Lung	lung
10	chr9:72620400-72621800	Enhancers	NHDF-Ad	bronchial
11	chr9:72620400-72621800	Enhancers	NHLF	lung
12	chr9:72620600-72621400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:72620600-72621800	Enhancers	NH-A	brain
14	chr9:72620600-72621800	Enhancers	Osteobl	bone
15	chr9:72620600-72622000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:72620800-72621200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:72620800-72621200	Enhancers	Brain Germinal Matrix	brain
18	chr9:72620800-72621200	Enhancers	Rectal Smooth Muscle	rectum
19	chr9:72620800-72621600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:72620800-72621800	Enhancers	Pancreas	Pancrea
21	chr9:72620800-72621800	Enhancers	HSMMtube	muscle
22	chr9:72620800-72622000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:72620800-72622000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr9:72620800-72622000	Enhancers	Colon Smooth Muscle	Colon
25	chr9:72621000-72621200	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr9:72621000-72621400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:72621000-72621400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:72621000-72621400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:72621000-72621600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:72621000-72621600	Enhancers	Muscle Satellite Cultured Cells	--

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