Variant report

Variant	rs10780773
Chromosome Location	chr9:72674739-72674740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10511980	0.88[AMR][1000 genomes]
rs10868453	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868475	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10868485	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10868524	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11141404	0.86[ASN][1000 genomes]
rs11141507	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1927103	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2997658	0.92[ASN][1000 genomes]
rs4543602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744974	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4744976	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6559939	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850742	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs943537	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72667600-72688400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:72668800-72675800	Enhancers	Rectal Smooth Muscle	rectum
3	chr9:72668800-72676600	Weak transcription	Gastric	stomach
4	chr9:72668800-72681400	Weak transcription	Esophagus	oesophagus
5	chr9:72669200-72675000	Weak transcription	NHDF-Ad	bronchial
6	chr9:72669200-72682600	Weak transcription	Osteobl	bone
7	chr9:72670000-72675000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:72670000-72688400	Weak transcription	NH-A	brain
9	chr9:72670200-72675000	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr9:72670200-72675200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:72670400-72674800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:72670600-72676000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:72671000-72675600	Enhancers	Stomach Smooth Muscle	stomach
14	chr9:72671200-72676000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:72671600-72675600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr9:72672000-72675600	Weak transcription	HSMM	muscle
17	chr9:72672000-72676000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:72672200-72675200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:72672400-72675800	Weak transcription	Spleen	Spleen
20	chr9:72672400-72680200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:72672400-72681400	Weak transcription	Ovary	ovary
22	chr9:72672600-72676600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr9:72673000-72675800	Enhancers	Colon Smooth Muscle	Colon
24	chr9:72673400-72674800	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr9:72674000-72680600	Weak transcription	Adipose Nuclei	Adipose
26	chr9:72674000-72682800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:72674000-72684400	Weak transcription	Fetal Stomach	stomach
28	chr9:72674200-72676800	Weak transcription	Right Atrium	heart
29	chr9:72674200-72679400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:72674400-72676000	Enhancers	HMEC	breast
31	chr9:72674600-72675000	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr9:72674600-72675600	Enhancers	NHEK	skin
33	chr9:72674600-72675800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr9:72674600-72677600	Genic enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links