Variant report

Variant	rs7850742
Chromosome Location	chr9:72720428-72720429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72707394..72709089-chr9:72720199..72722050,2	K562	blood:

Variant related genes	Relation type
ENSG00000204706	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10125617	0.86[CHB][hapmap]
rs10511980	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10780773	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10868453	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10868475	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10868485	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10868524	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10868720	0.86[CHB][hapmap]
rs11141507	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1927103	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2997658	0.81[ASN][1000 genomes]
rs4543602	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4744974	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4744976	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4745000	0.85[CHB][hapmap]
rs6559939	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs943537	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv949052	chr9:72698039-72741247	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv982638	chr9:72715341-72722036	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72694800-72721400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:72707400-72726800	Weak transcription	Pancreas	Pancrea
3	chr9:72709200-72721400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr9:72709400-72722600	Weak transcription	HSMM	muscle
5	chr9:72713200-72723200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:72713800-72725600	Weak transcription	Stomach Mucosa	stomach
7	chr9:72713800-72728200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:72714800-72742400	Weak transcription	Aorta	Aorta
9	chr9:72715400-72721400	Weak transcription	Fetal Stomach	stomach
10	chr9:72715600-72723200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr9:72715600-72723200	Weak transcription	Ovary	ovary
12	chr9:72715600-72725200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:72715600-72725400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:72715600-72725400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:72715600-72725600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:72715800-72721000	Weak transcription	HSMMtube	muscle
17	chr9:72715800-72724000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:72715800-72725400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr9:72716000-72725000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:72716200-72723200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:72716800-72721000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr9:72718000-72721600	Weak transcription	Colon Smooth Muscle	Colon
23	chr9:72719200-72723200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr9:72719400-72722800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:72720000-72720800	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr9:72720400-72721600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr9:72720400-72723200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr9:72720400-72723800	Weak transcription	Fetal Muscle Leg	muscle

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