Variant report

Variant	rs10782535
Chromosome Location	chr1:85457361-85457362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10873675	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1458401	1.00[ASN][1000 genomes]
rs2039814	1.00[ASN][1000 genomes]
rs486647	1.00[ASN][1000 genomes]
rs4907122	1.00[ASN][1000 genomes]
rs496561	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs499579	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs511765	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs517156	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs531169	1.00[ASN][1000 genomes]
rs534908	1.00[ASN][1000 genomes]
rs562126	1.00[ASN][1000 genomes]
rs586403	0.92[ASW][hapmap];1.00[ASN][1000 genomes]
rs589227	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs599137	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs599888	1.00[ASW][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs607298	1.00[ASN][1000 genomes]
rs614194	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61769365	1.00[ASN][1000 genomes]
rs641427	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6576737	1.00[ASN][1000 genomes]
rs6576740	1.00[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6576742	1.00[ASN][1000 genomes]
rs6576743	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs664763	1.00[ASN][1000 genomes]
rs6684210	1.00[ASN][1000 genomes]
rs6692907	0.81[AFR][1000 genomes]
rs679932	1.00[ASN][1000 genomes]
rs680330	1.00[ASW][hapmap];0.80[YRI][hapmap];1.00[ASN][1000 genomes]
rs7519717	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs7533496	0.92[ASW][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7537692	1.00[ASN][1000 genomes]
rs920340	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804097	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830448	chr1:85294094-85491110	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv470724	chr1:85334788-85585260	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv462383	chr1:85334788-85594466	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv546700	chr1:85334788-85594466	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv947434	chr1:85334915-85594135	Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv3515392	chr1:85437980-85465392	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3515393	chr1:85437980-85465392	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10782535	IL6R	trans	lymphoblastoid	seeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85441200-85460200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr1:85454800-85460600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr1:85454800-85461600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:85454800-85462000	Weak transcription	Spleen	Spleen
5	chr1:85454800-85462200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr1:85455800-85460000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr1:85456400-85458000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr1:85456400-85458400	Enhancers	Primary B cells from peripheral blood	blood
9	chr1:85456800-85458200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr1:85457000-85457800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr1:85457000-85458600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:85457200-85457400	Enhancers	Primary T cells fromperipheralblood	blood
13	chr1:85457200-85457400	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr1:85457200-85457400	Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr1:85457200-85457600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:85457200-85458200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr1:85457200-85458200	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
18	chr1:85457200-85460200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr1:85457200-85461800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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