Variant report

Variant	rs10783392
Chromosome Location	chr12:39193456-39193457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10444548	0.82[AFR][1000 genomes]
rs10783318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10875966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095572	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095574	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1386017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1393543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1601580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1684412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1968901	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2171221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2630777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2630781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653768	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4768342	0.84[AFR][1000 genomes]
rs4768358	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7309754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7971922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826852	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826883	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs844116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs964721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv676	chr12:39184359-39215822	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases
2	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39182600-39202800	Weak transcription	Liver	Liver
2	chr12:39184200-39205800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:39193400-39193800	Active TSS	H9 Cell Line	embryonic stem cell

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