Variant report

Variant	rs2653759
Chromosome Location	chr12:39034631-39034632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10783318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10783392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10875966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1386017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1393536	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1393543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1393544	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1601580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1604559	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1604560	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1684412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17124820	1.00[EUR][1000 genomes]
rs1968901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2171221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2630777	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2630781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653728	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653768	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4768358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6582708	0.90[EUR][1000 genomes]
rs7309754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7971922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7973073	0.90[EUR][1000 genomes]
rs826843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826852	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs844116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs905344	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs964721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422488	chr12:38103874-39070734	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv469356	chr12:38242029-39187408	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv558574	chr12:38242029-39187408	Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv1039538	chr12:38640895-39180750	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1039821	chr12:38959645-39121578	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1053316	chr12:38959645-39122853	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv1043831	chr12:38979065-39117868	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv541479	chr12:38979065-39117868	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39030800-39035000	Weak transcription	Esophagus	oesophagus
2	chr12:39034000-39034800	Weak transcription	Placenta	Placenta

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