Variant report

Variant	rs4768358
Chromosome Location	chr12:39185636-39185637
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10444548	0.83[AFR][1000 genomes]
rs10783318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10783392	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10875966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095572	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1095574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1386017	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1393543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1601580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1684412	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1968901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2171221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2630777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2630781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653768	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4768342	0.91[AFR][1000 genomes]
rs7309754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7971922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826843	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826850	0.84[AFR][1000 genomes]
rs826852	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs844116	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs964721	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469356	chr12:38242029-39187408	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv558574	chr12:38242029-39187408	Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv676	chr12:39184359-39215822	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39153800-39188600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:39169400-39186600	Weak transcription	Hela-S3	cervix
3	chr12:39177400-39188600	Weak transcription	Lung	lung
4	chr12:39180200-39188600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr12:39182600-39202800	Weak transcription	Liver	Liver
6	chr12:39184200-39186400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr12:39184200-39205800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:39185400-39185800	Enhancers	NHEK	skin
9	chr12:39185600-39190600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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