Variant report

Variant	rs1078359
Chromosome Location	chr4:125259639-125259640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125258287..125261207-chr4:125262422..125264529,2	K562	blood:

Extended variants
information (count: 235 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:229)

rs_ID	r²[population]
rs1078357	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1078358	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098738	0.93[AMR][1000 genomes]
rs11098740	0.93[AMR][1000 genomes]
rs1159231	0.93[AMR][1000 genomes]
rs12641347	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12643266	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12643717	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12644360	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12644739	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12645137	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12645203	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12645206	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12645755	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12647782	0.93[AMR][1000 genomes]
rs12648295	0.86[AMR][1000 genomes]
rs12648465	0.93[AMR][1000 genomes]
rs1379379	0.86[AMR][1000 genomes]
rs1403716	0.86[AMR][1000 genomes]
rs1438757	0.93[AMR][1000 genomes]
rs1520323	0.93[AMR][1000 genomes]
rs17007972	0.86[AMR][1000 genomes]
rs1915128	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2005185	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118742	0.86[AMR][1000 genomes]
rs2118743	0.86[AMR][1000 genomes]
rs2125001	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2893075	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34300106	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35516575	0.93[AMR][1000 genomes]
rs3915056	0.86[AMR][1000 genomes]
rs3915057	0.86[AMR][1000 genomes]
rs4292346	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4413420	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs572951	0.92[ASN][1000 genomes]
rs62319361	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62319362	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62319406	0.86[AMR][1000 genomes]
rs62319410	0.86[AMR][1000 genomes]
rs62319490	0.93[AMR][1000 genomes]
rs62319491	0.93[AMR][1000 genomes]
rs62319492	0.93[AMR][1000 genomes]
rs62319493	0.86[AMR][1000 genomes]
rs62319494	0.93[AMR][1000 genomes]
rs62319495	0.93[AMR][1000 genomes]
rs62319496	0.93[AMR][1000 genomes]
rs62319498	0.85[AMR][1000 genomes]
rs62319499	0.93[AMR][1000 genomes]
rs62319500	0.93[AMR][1000 genomes]
rs62319501	0.93[AMR][1000 genomes]
rs62319502	0.93[AMR][1000 genomes]
rs62319503	0.93[AMR][1000 genomes]
rs62319504	0.93[AMR][1000 genomes]
rs62319506	0.93[AMR][1000 genomes]
rs62319507	0.86[AMR][1000 genomes]
rs62319508	0.93[AMR][1000 genomes]
rs62319509	0.93[AMR][1000 genomes]
rs62319510	0.93[AMR][1000 genomes]
rs62319511	0.93[AMR][1000 genomes]
rs62319512	0.93[AMR][1000 genomes]
rs62319513	0.93[AMR][1000 genomes]
rs62319514	0.93[AMR][1000 genomes]
rs62319515	0.93[AMR][1000 genomes]
rs62319516	0.93[AMR][1000 genomes]
rs62319517	0.93[AMR][1000 genomes]
rs62319518	0.93[AMR][1000 genomes]
rs62319519	0.93[AMR][1000 genomes]
rs62319520	0.93[AMR][1000 genomes]
rs62320057	0.93[AMR][1000 genomes]
rs62320058	0.85[AMR][1000 genomes]
rs62320059	0.93[AMR][1000 genomes]
rs62320368	0.93[AMR][1000 genomes]
rs62320369	0.93[AMR][1000 genomes]
rs62320371	0.93[AMR][1000 genomes]
rs62320372	0.93[AMR][1000 genomes]
rs62320373	0.93[AMR][1000 genomes]
rs62320374	0.93[AMR][1000 genomes]
rs62320375	0.93[AMR][1000 genomes]
rs62320376	0.93[AMR][1000 genomes]
rs62320377	0.93[AMR][1000 genomes]
rs62320387	0.93[AMR][1000 genomes]
rs62320450	0.93[AMR][1000 genomes]
rs62320455	0.93[AMR][1000 genomes]
rs62320456	0.93[AMR][1000 genomes]
rs62320458	0.93[AMR][1000 genomes]
rs62320459	0.86[AMR][1000 genomes]
rs62320665	0.86[AMR][1000 genomes]
rs62320677	0.86[AMR][1000 genomes]
rs62320680	0.86[AMR][1000 genomes]
rs62320685	0.86[AMR][1000 genomes]
rs62320686	0.86[AMR][1000 genomes]
rs62320687	0.86[AMR][1000 genomes]
rs62320689	0.86[AMR][1000 genomes]
rs62320691	0.86[AMR][1000 genomes]
rs62320860	0.86[AMR][1000 genomes]
rs62320861	0.86[AMR][1000 genomes]
rs62320862	0.86[AMR][1000 genomes]
rs62320863	0.86[AMR][1000 genomes]
rs62320865	0.86[AMR][1000 genomes]
rs62320869	0.86[AMR][1000 genomes]
rs62320870	0.86[AMR][1000 genomes]
rs62320871	0.86[AMR][1000 genomes]
rs62320872	0.86[AMR][1000 genomes]
rs62320873	0.86[AMR][1000 genomes]
rs62320874	0.86[AMR][1000 genomes]
rs62320875	0.93[AMR][1000 genomes]
rs62320876	0.86[AMR][1000 genomes]
rs62320877	0.86[AMR][1000 genomes]
rs62320878	0.86[AMR][1000 genomes]
rs62320885	0.86[AMR][1000 genomes]
rs62320890	0.86[AMR][1000 genomes]
rs62320891	0.86[AMR][1000 genomes]
rs62320892	0.93[AMR][1000 genomes]
rs62320894	0.86[AMR][1000 genomes]
rs62320895	0.86[AMR][1000 genomes]
rs62320896	0.86[AMR][1000 genomes]
rs62320897	0.86[AMR][1000 genomes]
rs62320898	0.86[AMR][1000 genomes]
rs62320899	0.93[AMR][1000 genomes]
rs62320900	0.86[AMR][1000 genomes]
rs62320901	0.93[AMR][1000 genomes]
rs62320902	0.86[AMR][1000 genomes]
rs62320903	0.86[AMR][1000 genomes]
rs62320904	0.93[AMR][1000 genomes]
rs62320905	0.93[AMR][1000 genomes]
rs62320906	0.93[AMR][1000 genomes]
rs62320907	0.86[AMR][1000 genomes]
rs62320908	0.86[AMR][1000 genomes]
rs62320909	0.86[AMR][1000 genomes]
rs62320910	0.86[AMR][1000 genomes]
rs62320911	0.86[AMR][1000 genomes]
rs62320912	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62320940	0.86[AMR][1000 genomes]
rs62320945	0.86[AMR][1000 genomes]
rs62320946	0.86[AMR][1000 genomes]
rs62320947	0.86[AMR][1000 genomes]
rs62320948	0.86[AMR][1000 genomes]
rs62320949	0.86[AMR][1000 genomes]
rs62320950	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62320951	0.86[AMR][1000 genomes]
rs62320952	0.86[AMR][1000 genomes]
rs62320953	0.86[AMR][1000 genomes]
rs62320954	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62321960	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321961	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321962	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321964	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321965	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321966	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321967	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321968	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321969	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62321970	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62321971	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62321973	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62321974	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62321999	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322000	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322001	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322002	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322003	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322004	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322006	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322007	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322008	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322009	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322010	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322011	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322012	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322013	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322014	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322015	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322016	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322017	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322024	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322025	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322062	0.93[AMR][1000 genomes]
rs62322069	0.93[AMR][1000 genomes]
rs62322071	0.93[AMR][1000 genomes]
rs62322073	0.93[AMR][1000 genomes]
rs62322074	0.93[AMR][1000 genomes]
rs62322075	0.93[AMR][1000 genomes]
rs6819495	0.86[AMR][1000 genomes]
rs6829495	0.86[AMR][1000 genomes]
rs6834583	0.86[AMR][1000 genomes]
rs6845822	0.86[AMR][1000 genomes]
rs72674756	0.93[AMR][1000 genomes]
rs72674761	0.93[AMR][1000 genomes]
rs72674763	0.93[AMR][1000 genomes]
rs72674766	0.93[AMR][1000 genomes]
rs72674768	0.93[AMR][1000 genomes]
rs72674769	0.93[AMR][1000 genomes]
rs72674773	0.93[AMR][1000 genomes]
rs72674774	0.93[AMR][1000 genomes]
rs72674778	0.93[AMR][1000 genomes]
rs72674780	0.93[AMR][1000 genomes]
rs72674782	0.93[AMR][1000 genomes]
rs72674794	0.93[AMR][1000 genomes]
rs72676607	0.93[AMR][1000 genomes]
rs72676612	0.86[AMR][1000 genomes]
rs72676614	0.93[AMR][1000 genomes]
rs72676622	0.86[AMR][1000 genomes]
rs72676629	0.86[AMR][1000 genomes]
rs72676630	0.86[AMR][1000 genomes]
rs72676641	0.86[AMR][1000 genomes]
rs72676643	0.86[AMR][1000 genomes]
rs72676649	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72676653	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72676654	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72676655	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72676660	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72676661	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72676665	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72676667	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72676668	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72676669	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72676671	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72676672	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72678434	0.86[AMR][1000 genomes]
rs72678451	0.86[AMR][1000 genomes]
rs72678473	0.87[AMR][1000 genomes]
rs7692785	0.86[AMR][1000 genomes]
rs7692892	0.86[AMR][1000 genomes]
rs7693805	0.86[AMR][1000 genomes]
rs7694231	0.93[AMR][1000 genomes]
rs7694670	0.86[AMR][1000 genomes]
rs7697307	0.86[AMR][1000 genomes]
rs9790377	0.86[AMR][1000 genomes]
rs9790382	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv432624	chr4:125013395-125367740	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998024	chr4:125019384-125380876	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537241	chr4:125019384-125380876	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1015049	chr4:125037090-125393067	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125255800-125264400	Weak transcription	NHDF-Ad	bronchial
2	chr4:125258800-125259800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr4:125258800-125260000	Enhancers	Fetal Stomach	stomach

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