Variant report

Variant	rs62321966
Chromosome Location	chr4:125258899-125258900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125258287..125261207-chr4:125262422..125264529,2	K562	blood:
2	chr4:125257382..125259389-chr4:125631616..125634382,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1078357	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1078358	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1078359	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12641347	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12643266	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12643717	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12644360	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12644739	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12645137	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12645203	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12645206	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12645755	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1915128	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2005185	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2125001	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2893075	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34300106	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4292346	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4413420	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs572951	0.92[ASN][1000 genomes]
rs59131282	0.94[AFR][1000 genomes]
rs62319361	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62319362	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62320912	0.85[EUR][1000 genomes]
rs62320950	0.85[EUR][1000 genomes]
rs62320954	0.85[EUR][1000 genomes]
rs62321960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321961	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321962	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321964	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321965	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321967	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321968	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321969	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62321970	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62321971	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62321973	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62321974	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62321999	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322000	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322001	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322002	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322003	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322004	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322006	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322007	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322008	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322009	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322010	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322011	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322012	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322013	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322014	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322015	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322016	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322017	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322024	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62322025	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72676649	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72676653	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72676654	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72676655	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72676660	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72676661	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72676665	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72676667	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72676668	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72676669	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72676671	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72676672	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72919151	0.94[AFR][1000 genomes]
rs72919155	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv432624	chr4:125013395-125367740	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998024	chr4:125019384-125380876	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537241	chr4:125019384-125380876	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1015049	chr4:125037090-125393067	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125255800-125259000	Weak transcription	Fetal Kidney	kidney
2	chr4:125255800-125259000	Weak transcription	Fetal Lung	lung
3	chr4:125255800-125264400	Weak transcription	NHDF-Ad	bronchial
4	chr4:125258200-125259000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:125258200-125259400	Enhancers	Fetal Muscle Leg	muscle
6	chr4:125258800-125259400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:125258800-125259600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:125258800-125259800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr4:125258800-125260000	Enhancers	Fetal Stomach	stomach

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